2.350 Å
X-ray
2015-06-17
| Name: | Thymine dioxygenase |
|---|---|
| ID: | Q7RYZ9_NEUCR |
| AC: | Q7RYZ9 |
| Organism: | Neurospora crassa |
| Reign: | Eukaryota |
| TaxID: | 367110 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| D | 100 % |
| B-Factor: | 27.236 |
|---|---|
| Number of residues: | 16 |
| Including | |
| Standard Amino Acids: | 16 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.438 | 732.375 |
| % Hydrophobic | % Polar |
|---|---|
| 45.62 | 54.38 |
| According to VolSite | |

| HET Code: | HMU |
|---|---|
| Formula: | C5H6N2O3 |
| Molecular weight: | 142.113 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 60 % |
| Polar Surface area: | 78.42 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 3 |
| H-Bond Donors: | 3 |
| Rings: | 1 |
| Aromatic rings: | 0 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 1 |
| X | Y | Z |
|---|---|---|
| -27.0487 | 60.5152 | -24.5644 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2 | ND2 | ASN- 87 | 3.18 | 160.36 | H-Bond (Protein Donor) |
| CM5 | CB | ASP- 216 | 4.43 | 0 | Hydrophobic |
| O4 | N | TYR- 217 | 2.78 | 165.19 | H-Bond (Protein Donor) |
| CM5 | CZ | TYR- 217 | 4.18 | 0 | Hydrophobic |
| CM5 | CE1 | PHE- 292 | 4.12 | 0 | Hydrophobic |