2.350 Å
X-ray
2015-06-17
Name: | Thymine dioxygenase |
---|---|
ID: | Q7RYZ9_NEUCR |
AC: | Q7RYZ9 |
Organism: | Neurospora crassa |
Reign: | Eukaryota |
TaxID: | 367110 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
D | 100 % |
B-Factor: | 27.236 |
---|---|
Number of residues: | 16 |
Including | |
Standard Amino Acids: | 16 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.438 | 732.375 |
% Hydrophobic | % Polar |
---|---|
45.62 | 54.38 |
According to VolSite |
HET Code: | HMU |
---|---|
Formula: | C5H6N2O3 |
Molecular weight: | 142.113 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 60 % |
Polar Surface area: | 78.42 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 3 |
H-Bond Donors: | 3 |
Rings: | 1 |
Aromatic rings: | 0 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 1 |
X | Y | Z |
---|---|---|
-27.0487 | 60.5152 | -24.5644 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2 | ND2 | ASN- 87 | 3.18 | 160.36 | H-Bond (Protein Donor) |
CM5 | CB | ASP- 216 | 4.43 | 0 | Hydrophobic |
O4 | N | TYR- 217 | 2.78 | 165.19 | H-Bond (Protein Donor) |
CM5 | CZ | TYR- 217 | 4.18 | 0 | Hydrophobic |
CM5 | CE1 | PHE- 292 | 4.12 | 0 | Hydrophobic |