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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Protein Data Bank Entry:

1kwr

2.250 Å

X-ray

2002-01-30

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:Carbonic anhydrase 2
ID:CAH2_HUMAN
AC:P00918
Organism:Homo sapiens
Reign:Eukaryota
TaxID:9606
EC Number:4.2.1.1


Chains:

Chain Name:Percentage of Residues
within binding site
A100 %


Ligand binding site composition:

B-Factor:8.855
Number of residues:23
Including
Standard Amino Acids: 22
Non Standard Amino Acids: 1
Water Molecules: 0
Cofactors:
Metals: ZN

Cavity properties

LigandabilityVolume (Å3)
0.317371.250

% Hydrophobic% Polar
40.9159.09
According to VolSite

Ligand :
1kwr_1 Structure
HET Code: SG2
Formula: C8H8N2O3S2
Molecular weight: 244.291 g/mol
DrugBank ID: DB03294
Buried Surface Area:61.32 %
Polar Surface area: 114.15 Å2
Number of
H-Bond Acceptors: 5
H-Bond Donors: 1
Rings: 2
Aromatic rings: 1
Anionic atoms: 0
Cationic atoms: 0
Rule of Five Violation: 0
Rotatable Bonds: 1

Mass center Coordinates

XYZ
-4.944273.3775314.8685


Binding mode :
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Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
C11CG2VAL- 1213.790Hydrophobic
S7CZPHE- 1313.750Hydrophobic
C2CD2LEU- 1983.540Hydrophobic
N12OG1THR- 1992.65146.3H-Bond
(Ligand Donor)
O14NTHR- 1992.83150.51H-Bond
(Protein Donor)
C3CG2THR- 2004.190Hydrophobic
C4CBTHR- 2004.490Hydrophobic
N12ZN ZN- 2621.660Metal Acceptor