scPDB - 1kwq entry

Protein Data Bank Entry:

PDB ID : 1kwq

Resolution :2.600 Å

Experimental Method : X-ray

Deposition Date : 2002-01-30

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Carbonic anhydrase 2
ID:	CAH2_HUMAN
AC:	P00918
Organism:	Homo sapiens
Reign:	Eukaryota
TaxID:	9606
EC Number:	4.2.1.1

Chains:

Chain Name:	Percentage of Residues within binding site
A	100 %

Ligand binding site composition:

B-Factor:	5.906
Number of residues:	24
Including
Standard Amino Acids:	23
Non Standard Amino Acids:	1
Water Molecules:	0
Cofactors:
Metals:	ZN

Cavity properties

Ligandability	Volume (Å3)
0.507	347.625

% Hydrophobic	% Polar
45.63	54.37
According to VolSite

Ligand :

HET Code:	SG1
Formula:	C10H11N3O5S
Molecular weight:	285.276 g/mol
DrugBank ID:	DB04394
Buried Surface Area:	60.78 %
Polar Surface area:	134.66 Å2

Number of
H-Bond Acceptors:	5
H-Bond Donors:	1
Rings:	2
Aromatic rings:	1
Anionic atoms:	1
Cationic atoms:	1
Rule of Five Violation:	0
Rotatable Bonds:	3

Mass center Coordinates

X	Y	Z
-4.75495	4.03163	14.7075

Binding mode :

What is Poseview ?

2D View
3D View

Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
C16	CG2	VAL- 121	3.89	0	Hydrophobic	false
C10	CE2	PHE- 131	4.39	0	Hydrophobic	false
C3	CB	LEU- 198	4.43	0	Hydrophobic	false
C16	CD2	LEU- 198	3.67	0	Hydrophobic	false
N17	OG1	THR- 199	3	163.47	H-Bond (Ligand Donor)	false
O19	N	THR- 199	2.98	148.47	H-Bond (Protein Donor)	false
C3	CG2	THR- 200	3.95	0	Hydrophobic	false
C4	CB	THR- 200	4.35	0	Hydrophobic	false
N17	ZN	ZN- 262	2.09	0	Metal Acceptor	false