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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Protein Data Bank Entry:

2eu3

1.600 Å

X-ray

2005-10-28

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:Carbonic anhydrase 2
ID:CAH2_HUMAN
AC:P00918
Organism:Homo sapiens
Reign:Eukaryota
TaxID:9606
EC Number:4.2.1.1


Chains:

Chain Name:Percentage of Residues
within binding site
A100 %


Ligand binding site composition:

B-Factor:13.733
Number of residues:29
Including
Standard Amino Acids: 27
Non Standard Amino Acids: 1
Water Molecules: 1
Cofactors:
Metals: ZN

Cavity properties

LigandabilityVolume (Å3)
0.475384.750

% Hydrophobic% Polar
49.1250.88
According to VolSite

Ligand :
2eu3_1 Structure
HET Code: FF3
Formula: C3H4F2N4O2S2
Molecular weight: 230.216 g/mol
DrugBank ID: -
Buried Surface Area:71.15 %
Polar Surface area: 148.57 Å2
Number of
H-Bond Acceptors: 5
H-Bond Donors: 2
Rings: 1
Aromatic rings: 1
Anionic atoms: 0
Cationic atoms: 0
Rule of Five Violation: 0
Rotatable Bonds: 2

Mass center Coordinates

XYZ
-5.066311.3448514.6851


Binding mode :
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Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
N4OD1ASN- 673.12149.45H-Bond
(Ligand Donor)
N1NE2GLN- 923.09145.7H-Bond
(Protein Donor)
DuArDuArHIS- 943.490Aromatic Face/Face
F1CD2LEU- 1983.280Hydrophobic
F2CBLEU- 1983.670Hydrophobic
O1NTHR- 1992.88152.81H-Bond
(Protein Donor)
N3OG1THR- 1992.79159.74H-Bond
(Ligand Donor)
S1CG2THR- 2003.720Hydrophobic
F2CBTHR- 2003.550Hydrophobic
N3ZN ZN- 2621.970Metal Acceptor