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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2eu3FF3Carbonic anhydrase 24.2.1.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity
Align
2eu3FF3Carbonic anhydrase 24.2.1.11.000
3eft3BSCarbonic anhydrase 24.2.1.10.827
1g52F2BCarbonic anhydrase 24.2.1.10.825
1zsbAZMCarbonic anhydrase 24.2.1.10.823
1if6FBUCarbonic anhydrase 24.2.1.10.820
2wehFB1Carbonic anhydrase 24.2.1.10.819
3b4fTUOCarbonic anhydrase 24.2.1.10.809
3ffpLC1Carbonic anhydrase 24.2.1.10.808
3m5eJDRCarbonic anhydrase 24.2.1.10.803
3m98E02Carbonic anhydrase 24.2.1.10.797
3m2nJ74Carbonic anhydrase 24.2.1.10.792
3k2fNKXCarbonic anhydrase 24.2.1.10.780
4kniE1ECarbonic anhydrase 24.2.1.10.774
1g1dFSBCarbonic anhydrase 24.2.1.10.756
2h15B19Carbonic anhydrase 24.2.1.10.750
3s8xE59Carbonic anhydrase 24.2.1.10.748
3qykIE2Carbonic anhydrase 24.2.1.10.747
1kwrSG2Carbonic anhydrase 24.2.1.10.745
3s9tE49Carbonic anhydrase 24.2.1.10.744
3saxE50Carbonic anhydrase 24.2.1.10.738
3sbiE90Carbonic anhydrase 24.2.1.10.736
1g4jFFBCarbonic anhydrase 24.2.1.10.734
4itp1GDCarbonic anhydrase 24.2.1.10.732
3dazMZMCarbonic anhydrase 24.2.1.10.722
1bn4AL9Carbonic anhydrase 24.2.1.10.719
3m2yBE0Carbonic anhydrase 24.2.1.10.719
1kwqSG1Carbonic anhydrase 24.2.1.10.718
3mhiJ90Carbonic anhydrase 24.2.1.10.717
1i9nIOACarbonic anhydrase 24.2.1.10.716
4iwz1GOCarbonic anhydrase 24.2.1.10.716
1g45FSBCarbonic anhydrase 24.2.1.10.712
3m40J45Carbonic anhydrase 24.2.1.10.712
3sbhE65Carbonic anhydrase 24.2.1.10.712
1a42BZUCarbonic anhydrase 24.2.1.10.710
3m67E36Carbonic anhydrase 24.2.1.10.710
2h4nAZMCarbonic anhydrase 24.2.1.10.708
4k13ETSCarbonic anhydrase 24.2.1.10.708
3f4xKLTCarbonic anhydrase 24.2.1.10.707
3mhoJ43Carbonic anhydrase 24.2.1.10.706
1i9mINWCarbonic anhydrase 24.2.1.10.705
1oklMNSCarbonic anhydrase 24.2.1.10.703
4kap1QVCarbonic anhydrase 24.2.1.10.699
1bnmAL8Carbonic anhydrase 24.2.1.10.698
3dd82C7Carbonic anhydrase 24.2.1.10.697
1i8zINLCarbonic anhydrase 24.2.1.10.696
3oikWZBCarbonic anhydrase 24.2.1.10.693
1if4FBSCarbonic anhydrase 24.2.1.10.690
1bnvAL7Carbonic anhydrase 24.2.1.10.688
1oq5CELCarbonic anhydrase 24.2.1.10.688
1bn1AL5Carbonic anhydrase 24.2.1.10.687
3m96E38Carbonic anhydrase 24.2.1.10.687
1bnnAL1Carbonic anhydrase 24.2.1.10.685
3myqE27Carbonic anhydrase 24.2.1.10.683
4mo82VQCarbonic anhydrase 24.2.1.10.683
3po6DT9Carbonic anhydrase 24.2.1.10.682
3mnaDWHCarbonic anhydrase 24.2.1.10.681
3dc3AZMCarbonic anhydrase 24.2.1.10.680
4bf6X0QCarbonic anhydrase 24.2.1.10.680
3mmfD9HCarbonic anhydrase 24.2.1.10.675
4itoMPXCarbonic anhydrase 24.2.1.10.675
4m2vBZ1Carbonic anhydrase 24.2.1.10.673
1i90INMCarbonic anhydrase 24.2.1.10.672
2wejFB2Carbonic anhydrase 24.2.1.10.670
1g4oBSBCarbonic anhydrase 24.2.1.10.669
3kigDA4Carbonic anhydrase 24.2.1.10.664
3oimVZ5Carbonic anhydrase 24.2.1.10.663
4knjE1FCarbonic anhydrase 24.2.1.10.662
5fltVJJCarbonic anhydrase 24.2.1.10.662
1bnwTPDCarbonic anhydrase 24.2.1.10.661
1g54FFBCarbonic anhydrase 24.2.1.10.661
3d9zD9ZCarbonic anhydrase 24.2.1.10.661
3oy0OY0Carbonic anhydrase 24.2.1.10.661
3n0nP9BCarbonic anhydrase 24.2.1.10.657
1if7SBRCarbonic anhydrase 24.2.1.10.656
3hkuTORCarbonic anhydrase 24.2.1.10.656
3dccD9ZCarbonic anhydrase 24.2.1.10.655
3nb5R21Carbonic anhydrase 24.2.1.10.655
1i91INQCarbonic anhydrase 24.2.1.10.653
2x7tWZBCarbonic anhydrase 24.2.1.10.653
3dcsMZMCarbonic anhydrase 24.2.1.10.653
4n16CHDCarbonic anhydrase 24.2.1.10.651
3oysOYSCarbonic anhydrase 24.2.1.10.649
4m2rBZ1Carbonic anhydrase 24.2.1.10.648
2wegFBVCarbonic anhydrase 24.2.1.10.646
4ilx1EZCarbonic anhydrase 24.2.1.10.643
3mhlJ71Carbonic anhydrase 24.2.1.10.638
3n3jWWVCarbonic anhydrase 24.2.1.10.637
1bntAL2Carbonic anhydrase 24.2.1.10.635
4k0tD9ZCarbonic anhydrase 24.2.1.10.634
1cilETSCarbonic anhydrase 24.2.1.10.632
3d8wD8WCarbonic anhydrase 24.2.1.10.630
3mhcARZCarbonic anhydrase 24.2.1.10.628
3t84SG6Carbonic anhydrase 24.2.1.10.628
2powI7CCarbonic anhydrase 24.2.1.10.627
4bf19FKCarbonic anhydrase 24.2.1.10.627
1okmSABCarbonic anhydrase 24.2.1.10.626
1ttm667Carbonic anhydrase 24.2.1.10.626
1cnyEG3Carbonic anhydrase 24.2.1.10.623
3igpDT7Carbonic anhydrase 24.2.1.10.623
3ni5C1HCarbonic anhydrase 24.2.1.10.623
3bl1BL1Carbonic anhydrase 24.2.1.10.620
3mzcS6ICarbonic anhydrase 24.2.1.10.620
1oknSTBCarbonic anhydrase 24.2.1.10.615
2weoFBWCarbonic anhydrase 24.2.1.10.610
3v2jAZMCarbonic anhydrase 24.2.1.10.610
1if8SBSCarbonic anhydrase 24.2.1.10.608
1eouSMSCarbonic anhydrase 24.2.1.10.607
3ml2SU0Carbonic anhydrase 24.2.1.10.607
3n4bWWZCarbonic anhydrase 24.2.1.10.607
1xpz4TZCarbonic anhydrase 24.2.1.10.606
3dcwEZLCarbonic anhydrase 24.2.1.10.606
3l14I7BCarbonic anhydrase 24.2.1.10.604
3rz8RZ8Carbonic anhydrase 24.2.1.10.603
4pxxCHDCarbonic anhydrase 24.2.1.10.603
1bn3AL6Carbonic anhydrase 24.2.1.10.594
1xq04TRCarbonic anhydrase 24.2.1.10.593
3n2pAYXCarbonic anhydrase 24.2.1.10.592
1bnuAL3Carbonic anhydrase 24.2.1.10.591
1cnwEG1Carbonic anhydrase 24.2.1.10.589
3mdzEZLCarbonic anhydrase 74.2.1.10.587
3dbuD8WCarbonic anhydrase 24.2.1.10.586
1bnqAL4Carbonic anhydrase 24.2.1.10.584
3t85SG7Carbonic anhydrase 24.2.1.10.582
3betCTFCarbonic anhydrase 24.2.1.10.581
1if5FBTCarbonic anhydrase 24.2.1.10.580
3oyqOYQCarbonic anhydrase 24.2.1.10.577
3t82SG4Carbonic anhydrase 24.2.1.10.577
3dd0EZLCarbonic anhydrase 24.2.1.10.574
2wd2MS5Carbonic anhydrase 24.2.1.10.573
1ydaAZMCarbonic anhydrase 24.2.1.10.572
3zncBZ1Carbonic anhydrase 44.2.1.10.569
1jd0AZMCarbonic anhydrase 124.2.1.10.568
3p5lIT5Carbonic anhydrase 24.2.1.10.568
4kp8E1GCarbonic anhydrase 124.2.1.10.568
3f7bAG5Carbonic anhydrase 44.2.1.10.562
1i9qIOFCarbonic anhydrase 24.2.1.10.560
4ht2V50Carbonic anhydrase 124.2.1.10.556
4kp5E1FCarbonic anhydrase 124.2.1.10.552
3f7uAG4Carbonic anhydrase 44.2.1.10.548
4lu3AZMCarbonic anhydrase 144.2.1.10.548
4dz7D02Carbonic anhydrase 24.2.1.10.546
2q1qOSPCarbonic anhydrase 24.2.1.10.540
1i9pIOECarbonic anhydrase 24.2.1.10.539
2x7uWZACarbonic anhydrase 24.2.1.10.536
4uovAZMCarbonate dehydratase/0.523
1rj6AZMCarbonic anhydrase 144.2.1.10.521
3fw3ETSCarbonic anhydrase 44.2.1.10.520
4x5sAZMCarbonic anhydrase (Carbonate dehydratase)/0.510
4knmE1ECarbonic anhydrase 134.2.1.10.508
3h3qH13Collagen type IV alpha-3-binding protein/0.503
1cnxEG2Carbonic anhydrase 24.2.1.10.500
4k0zMZMCarbonic anhydrase 24.2.1.10.490
3h3t16HCollagen type IV alpha-3-binding protein/0.486
4xiwAZMCarbonic anhydrase, alpha type/0.486
4kbyC2EStimulator of interferon genes protein/0.479
3dylIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.477
1w6hTITPlasmepsin-23.4.23.390.476
1n95HFPProtein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha/0.471
1n95HFPProtein farnesyltransferase subunit beta2.5.1.580.471
3zbsOVE2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.471
3lxeTORCarbonic anhydrase 14.2.1.10.469
1foaUD1Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase2.4.1.1010.468
2wu4HBPAcetylcholinesterase3.1.1.70.468
1n95FTHProtein farnesyltransferase subunit beta2.5.1.580.467
3jsiWTCHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.465
1lc3NADBiliverdin reductase A1.3.1.240.463
2q1uNADPutative nucleotide sugar epimerase/ dehydratase/0.463
4knnE1FCarbonic anhydrase 134.2.1.10.463
1x1aSAMC-20 methyltransferase/0.462
1xe65FPPlasmepsin-23.4.23.390.462
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.461
4bfxZVXPantothenate kinase2.7.1.330.461
4nvk2NYPeroxidase/0.461
1kyxCRM6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.460
1npdNADQuinate/shikimate dehydrogenase/0.460
3h3r14HCollagen type IV alpha-3-binding protein/0.460
4a802ANMajor pollen allergen Bet v 1-A/0.460
1h22E10Acetylcholinesterase3.1.1.70.459
3dylPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.459
2cekN8TAcetylcholinesterase3.1.1.70.458
2g8yNADHydroxycarboxylate dehydrogenase B/0.458
3p62FMNPentaerythritol tetranitrate reductase/0.458
3p74FMNPentaerythritol tetranitrate reductase/0.458
3k3ePDBHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.457
2gv8NDPThiol-specific monooxygenase1.14.130.456
4eplJAIJasmonic acid-amido synthetase JAR16.3.20.456
4hu1V13Carbonic anhydrase 134.2.1.10.456
1gpdNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.455
1xvaSAMGlycine N-methyltransferase2.1.1.200.455
2uxoTACHTH-type transcriptional regulator TtgR/0.455
1o9bNAIQuinate/shikimate dehydrogenase/0.454
1p0pBCHCholinesterase3.1.1.80.454
1vi2NADQuinate/shikimate dehydrogenase/0.454
2dvlFADAcyl-CoA dehydrogenase/0.454
3apwDP0Alpha-1-acid glycoprotein 2/0.454
3gfbNADL-threonine 3-dehydrogenase/0.454
3imgBZ3Pantothenate synthetase6.3.2.10.454
3jyqNADQuinate/shikimate dehydrogenase (NAD(+))/0.454
3s3vTOPDihydrofolate reductase1.5.1.30.454
4jicFMNGTN Reductase/0.454
4mrm2BYGamma-aminobutyric acid type B receptor subunit 1/0.454
4q0kGA3Phytohormone-binding protein/0.454
1tllFMNNitric oxide synthase, brain1.14.13.390.453
2g20L1ARenin3.4.23.150.453
2iibC5PAlpha-2,3/2,6-sialyltransferase/sialidase/0.453
2iyfERYOleandomycin glycosyltransferase2.4.10.453
2vatCOAAcetyl-CoA--deacetylcephalosporin C acetyltransferase2.3.1.1750.453
5fl49FKCarbonic anhydrase 94.2.1.10.453
1c7oPPGHemolysin/0.452
1q0zAKAAclacinomycin methylesterase RdmC3.1.1.950.452
1vyrFMNPentaerythritol tetranitrate reductase/0.452
3mpiFADGlutaryl-CoA dehydrogenase1.3.99.320.452
4a86H35Major pollen allergen Bet v 1-A/0.452
1h51FMNPentaerythritol tetranitrate reductase/0.451
1q51CAA1,4-dihydroxy-2-naphthoyl-CoA synthase/0.451
1rt9IMHPurine nucleoside phosphorylase2.4.2.10.451
1wzeNADMalate dehydrogenase/0.451
3ixp834Ecdysone receptor/0.451
4oqyNDP(S)-imine reductase/0.451
1qyxASDEstradiol 17-beta-dehydrogenase 11.1.1.620.450
3own3OXRenin3.4.23.150.450
3p67FMNPentaerythritol tetranitrate reductase/0.450
3vydVYDRenin3.4.23.150.450
3vyfVYFRenin3.4.23.150.450
1rneC60Renin3.4.23.150.449
3otwCOAPhosphopantetheine adenylyltransferase/0.449
4a862ANMajor pollen allergen Bet v 1-A/0.449
2ikuLIYRenin3.4.23.150.448
3c3xNAPEugenol synthase 11.1.1.3180.448
3k8q22APurine nucleoside phosphorylase2.4.2.10.448
4a87NARMajor pollen allergen Bet v 1-A/0.448
4bfzZVZPantothenate kinase2.7.1.330.448
4drjRAPSerine/threonine-protein kinase mTOR2.7.11.10.448
4drjRAPPeptidyl-prolyl cis-trans isomerase FKBP45.2.1.80.448
4g2j0WFHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.448
1mxfMTXPutative pteridine reductase 2/0.447
2g1r3IGRenin3.4.23.150.447
2q1sNAIPutative nucleotide sugar epimerase/ dehydratase/0.447
2vigFADShort-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.10.447
2whqHI6Acetylcholinesterase3.1.1.70.447
3jypNADQuinate/shikimate dehydrogenase (NAD(+))/0.447
3v0p4GWHisto-blood group ABO system transferase/0.447
4ca83ESAngiotensin-converting enzyme3.4.15.10.447
4gh6LUOHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.447
2rqfJH3Hemolymph juvenile hormone binding protein/0.446
3f03FMNPentaerythritol tetranitrate reductase/0.446
3fhxPLPPyridoxal kinase2.7.1.350.446
4a83DXCMajor pollen allergen Bet v 1-A/0.446
4kq6DLZ6,7-dimethyl-8-ribityllumazine synthase/0.446
4r81FMNPredicted NADH dehydrogenase/0.446
1dmyAZMCarbonic anhydrase 5A, mitochondrial4.2.1.10.445
1po7TZDBenzoylformate decarboxylase4.1.1.70.445
2f98NGVAklanonic acid methyl ester cyclase AcmA5.5.1.230.445
2q1tNADPutative nucleotide sugar epimerase/ dehydratase/0.445
2zsaADPPantothenate kinase2.7.1.330.445
4g2l0WLHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.445
1bmdNADMalate dehydrogenase/0.444
1q0rAKTAclacinomycin methylesterase RdmC3.1.1.950.444
1w19T5P6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.444
2i65NADADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 13.2.2.60.444
2v2zADP4-diphosphocytidyl-2-C-methyl-D-erythritol kinase/0.444
4a81DXCMajor pollen allergen Bet v 1-A/0.444
1x1dSAHC-20 methyltransferase/0.443
1zp4FAD5,10-methylenetetrahydrofolate reductase1.5.1.200.443
2c12FADNitroalkane oxidase1.7.3.10.443
2g226IGRenin3.4.23.150.443
4bfvZVVPantothenate kinase2.7.1.330.443
4gdcNDPUDP-galactopyranose mutase/0.443
4xrbNDPPossible bifunctional enzyme riboflavin biosynthesis protein RibD: diaminohydroxyphosphoribosylaminopyrimidine deaminase (Riboflavin-specific deaminase) + 5-amino-6-(5-phosphoribosylamino)uracil reduc/0.443
3kxw1ZZSaframycin Mx1 synthetase B/0.442
3p80P80Pentaerythritol tetranitrate reductase/0.442
3qsaTA7Anthranilate phosphoribosyltransferase/0.442
3t4eNADQuinate/shikimate dehydrogenase/0.442
4ewn0VRImidazole glycerol phosphate synthase subunit HisF4.1.30.442
1rftPXMPyridoxal kinase2.7.1.350.441
2cy0NAPShikimate dehydrogenase (NADP(+))/0.441
2ea2F77Methionine aminopeptidase 2/0.441
2pncCLUPrimary amine oxidase, liver isozyme/0.441
2pzjNADPutative nucleotide sugar epimerase/ dehydratase/0.441
2q7oIMHPurine nucleoside phosphorylase2.4.2.10.441
2qimZEAClass 10 plant pathogenesis-related protein/0.441
2zsbADPPantothenate kinase2.7.1.330.441
2zvcSAHPrecorrin-3 C17-methyltransferase/0.441
3h3sH15Collagen type IV alpha-3-binding protein/0.441
3junAJDPhenazine biosynthesis protein A/B/0.441
4j3mAJ8Tankyrase-22.4.2.300.441
4ms1381Gamma-aminobutyric acid type B receptor subunit 1/0.441
1rkwPNTHTH-type transcriptional regulator QacR/0.440
2a1hGBNBranched-chain-amino-acid aminotransferase, mitochondrial2.6.1.420.440
2hs8FMN12-oxophytodienoate reductase 31.3.1.420.440
2qo5CHDFatty acid-binding protein 10-A, liver basic/0.440
3jswJARHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.440
3s55NADPutative short-chain dehydrogenase/reductase/0.440
3sl2ATPSensor histidine kinase WalK/0.440
3tqxPLP2-amino-3-ketobutyrate coenzyme A ligase/0.440
4a84DXCMajor pollen allergen Bet v 1-A/0.440
4hp8NAP2-deoxy-D-gluconate 3-dehydrogenase/0.440