2.300 Å
X-ray
2002-10-02
Name: | Putative pteridine reductase 2 |
---|---|
ID: | Q8I814_TRYCR |
AC: | Q8I814 |
Organism: | Trypanosoma cruzi |
Reign: | Eukaryota |
TaxID: | 5693 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 97 % |
D | 3 % |
B-Factor: | 35.003 |
---|---|
Number of residues: | 31 |
Including | |
Standard Amino Acids: | 29 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 1 |
Cofactors: | NDP |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.550 | 756.000 |
% Hydrophobic | % Polar |
---|---|
52.68 | 47.32 |
According to VolSite |
HET Code: | MTX |
---|---|
Formula: | C20H20N8O5 |
Molecular weight: | 452.423 g/mol |
DrugBank ID: | DB00563 |
Buried Surface Area: | 56.38 % |
Polar Surface area: | 216.2 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 12 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 3 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 9 |
X | Y | Z |
---|---|---|
17.3558 | 52.4495 | 24.5968 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
NA2 | OG | SER- 103 | 2.7 | 157.05 | H-Bond (Ligand Donor) |
DuAr | DuAr | TYR- 105 | 3.76 | 0 | Aromatic Face/Face |
C16 | CD2 | LEU- 176 | 3.4 | 0 | Hydrophobic |
NA4 | OH | TYR- 182 | 2.82 | 165.26 | H-Bond (Ligand Donor) |
CM | CD1 | LEU- 214 | 3.51 | 0 | Hydrophobic |
C9 | CD2 | LEU- 217 | 4.42 | 0 | Hydrophobic |
C13 | CG | PRO- 218 | 3.88 | 0 | Hydrophobic |
C12 | CE | MET- 221 | 3.87 | 0 | Hydrophobic |
CG | CE | MET- 221 | 4.06 | 0 | Hydrophobic |
O | OH | TYR- 229 | 2.99 | 147.75 | H-Bond (Protein Donor) |
CG | CZ | TYR- 229 | 4.28 | 0 | Hydrophobic |
N1 | O2A | NDP- 1277 | 2.89 | 151.3 | H-Bond (Ligand Donor) |
NA2 | O2A | NDP- 1277 | 3.11 | 140.71 | H-Bond (Ligand Donor) |