Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2wya | HMG | Hydroxymethylglutaryl-CoA synthase, mitochondrial | 2.3.3.10 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 2wya | HMG | Hydroxymethylglutaryl-CoA synthase, mitochondrial | 2.3.3.10 | 1.000 | |
| 2p8u | COA | Hydroxymethylglutaryl-CoA synthase, cytoplasmic | 2.3.3.10 | 0.594 | |
| 5hwq | CAA | Hydroxymethylglutaryl-CoA synthase | / | 0.593 | |
| 5hwo | HMG | Hydroxymethylglutaryl-CoA synthase | / | 0.586 | |
| 1txt | CAA | HMG-CoA synthase | / | 0.575 | |
| 5hwr | COA | Hydroxymethylglutaryl-CoA synthase | / | 0.567 | |
| 3sqz | COA | Putative hydroxymethylglutaryl-CoA synthase | / | 0.551 | |
| 5hwp | COA | Hydroxymethylglutaryl-CoA synthase | / | 0.522 | |
| 1ysl | COA | Hydroxymethylglutaryl-CoA synthase | 2.3.3.10 | 0.506 | |
| 1kbq | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.503 | |
| 1d4a | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.500 | |
| 1zg3 | 2HI | Isoflavone 4'-O-methyltransferase | / | 0.494 | |
| 4uwm | FMN | 3,6-diketocamphane 1,6 monooxygenase | 1.14.13 | 0.494 | |
| 4amb | DUD | Putative glycosyl transferase | / | 0.493 | |
| 4ozt | P1A | Ecdysone receptor, putative | / | 0.492 | |
| 1hb3 | SCV | Isopenicillin N synthase | 1.21.3.1 | 0.489 | |
| 2hdj | NDP | Aldo-keto reductase family 1 member C2 | / | 0.489 | |
| 2ivi | ACW | Isopenicillin N synthase | 1.21.3.1 | 0.484 | |
| 1qy5 | NEC | Endoplasmin | / | 0.482 | |
| 1xdd | AAY | Integrin alpha-L | / | 0.482 | |
| 1h69 | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.480 | |
| 3u9f | CLM | Chloramphenicol acetyltransferase | 2.3.1.28 | 0.480 | |
| 1gpd | NAD | Glyceraldehyde-3-phosphate dehydrogenase | 1.2.1.12 | 0.479 | |
| 3c3x | NAP | Eugenol synthase 1 | 1.1.1.318 | 0.479 | |
| 2qo5 | CHD | Fatty acid-binding protein 10-A, liver basic | / | 0.478 | |
| 3h3q | H13 | Collagen type IV alpha-3-binding protein | / | 0.478 | |
| 1hb1 | OCV | Isopenicillin N synthase | 1.21.3.1 | 0.477 | |
| 1qrp | HH0 | Pepsin A-4 | 3.4.23.1 | 0.477 | |
| 2dte | NAI | Glucose 1-dehydrogenase related protein | / | 0.477 | |
| 3uoz | FAD | 2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase | 1.14.13.160 | 0.477 | |
| 1h66 | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.476 | |
| 2hyd | ADP | Putative multidrug export ATP-binding/permease protein SAV1866 | 3.6.3 | 0.476 | |
| 4gdy | 0X1 | Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial | 2.6.1.39 | 0.476 | |
| 3lpi | Z74 | Beta-secretase 1 | 3.4.23.46 | 0.475 | |
| 2gv8 | NDP | Thiol-specific monooxygenase | 1.14.13 | 0.474 | |
| 3eks | CY9 | Actin-5C | / | 0.474 | |
| 3phi | NDP | Shikimate dehydrogenase (NADP(+)) | / | 0.474 | |
| 4qi7 | FAD | Cellobiose dehydrogenase | / | 0.474 | |
| 5a4k | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.474 | |
| 1xe5 | 5FE | Plasmepsin-2 | 3.4.23.39 | 0.473 | |
| 2gh5 | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.473 | |
| 2giv | ACO | Histone acetyltransferase KAT8 | / | 0.473 | |
| 2i4j | DRJ | Peroxisome proliferator-activated receptor gamma | / | 0.473 | |
| 2vbd | V10 | Isopenicillin N synthase | 1.21.3.1 | 0.473 | |
| 4dc0 | NDP | Putative ketoacyl reductase | 1.3.1 | 0.473 | |
| 3jyn | NDP | Quinone oxidoreductase | / | 0.472 | |
| 2a0x | DIH | Purine nucleoside phosphorylase | 2.4.2.1 | 0.471 | |
| 2hps | CTZ | Ca2+-triggered coelenterazine-binding protein 1 | / | 0.471 | |
| 2ktd | PUC | Prostaglandin-H2 D-isomerase | 5.3.99.2 | 0.471 | |
| 3fhy | ATP | Pyridoxal kinase | 2.7.1.35 | 0.471 | |
| 3jun | AKD | Phenazine biosynthesis protein A/B | / | 0.471 | |
| 1obn | ASV | Isopenicillin N synthase | 1.21.3.1 | 0.470 | |
| 1teh | NAD | Alcohol dehydrogenase class-3 | 1.1.1.1 | 0.470 | |
| 2iya | ZIO | Oleandomycin glycosyltransferase | / | 0.470 | |
| 3eku | CY9 | Actin-5C | / | 0.470 | |
| 4dh6 | 0KN | Beta-secretase 1 | 3.4.23.46 | 0.470 | |
| 4ipw | 1G7 | Mycocyclosin synthase | 1.14.21.9 | 0.470 | |
| 1h6d | NDP | Glucose--fructose oxidoreductase | 1.1.99.28 | 0.469 | |
| 2fzn | FAD | Bifunctional protein PutA | 1.5.5.2 | 0.469 | |
| 1dir | NAD | Dihydropteridine reductase | 1.5.1.34 | 0.468 | |
| 4twn | B96 | Ephrin type-A receptor 3 | 2.7.10.1 | 0.468 | |
| 5c2t | FAD | Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial | / | 0.468 | |
| 3bxx | QUE | Dihydroflavonol 4-reductase | 1.1.1.219 | 0.467 | |
| 3em0 | CHD | Fatty acid-binding protein 6, ileal (gastrotropin) | / | 0.467 | |
| 3gfb | NAD | L-threonine 3-dehydrogenase | / | 0.467 | |
| 4i0h | 1BL | Beta-secretase 1 | 3.4.23.46 | 0.467 | |
| 6cts | CIC | Citrate synthase, mitochondrial | 2.3.3.1 | 0.467 | |
| 4b8w | NAP | GDP-L-fucose synthase | 1.1.1.271 | 0.466 | |
| 4j7x | NAP | Sepiapterin reductase | 1.1.1.153 | 0.466 | |
| 4xo7 | NAP | Aldo-keto reductase family 1 member C2 | / | 0.466 | |
| 1g1a | NAD | dTDP-glucose 4,6-dehydratase | / | 0.465 | |
| 3cib | 314 | Beta-secretase 1 | 3.4.23.46 | 0.465 | |
| 3f1k | NAP | Uncharacterized oxidoreductase YciK | 1 | 0.465 | |
| 4ead | 0NP | Thymidine phosphorylase | 2.4.2.4 | 0.465 | |
| 5irn | ADP | Nucleotide binding oligomerization domain containing 2 | / | 0.465 | |
| 1rfu | ADP | Pyridoxal kinase | 2.7.1.35 | 0.464 | |
| 1kbo | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.463 | |
| 1qor | NDP | Quinone oxidoreductase 1 | / | 0.463 | |
| 2psw | COA | N-alpha-acetyltransferase 50 | / | 0.463 | |
| 2wd9 | IBP | Acyl-coenzyme A synthetase ACSM2A, mitochondrial | 6.2.1.2 | 0.463 | |
| 3p4t | FAO | Putative acyl-CoA dehydrogenase | / | 0.463 | |
| 2fw3 | BUI | Carnitine O-palmitoyltransferase 2, mitochondrial | 2.3.1.21 | 0.462 | |
| 3vsx | R32 | Renin | 3.4.23.15 | 0.462 | |
| 4bb3 | KKA | Isopenicillin N synthase | 1.21.3.1 | 0.462 | |
| 4k8s | 1QT | Beta-secretase 1 | 3.4.23.46 | 0.462 | |
| 1gg5 | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.461 | |
| 1ot7 | IU5 | Bile acid receptor | / | 0.461 | |
| 1x1d | SAH | C-20 methyltransferase | / | 0.461 | |
| 4n6b | COA | Uncharacterized protein | / | 0.461 | |
| 5c7h | NDP | Putative oxidoreductase | / | 0.461 | |
| 3sn6 | P0G | Beta-2 adrenergic receptor | / | 0.461 | |
| 1pz1 | NAP | General stress protein 69 | / | 0.460 | |
| 2cib | CM6 | Lanosterol 14-alpha demethylase | 1.14.13.70 | 0.460 | |
| 3g5s | FAD | Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO | / | 0.460 | |
| 1iol | EST | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.459 | |
| 4q71 | FAD | Bifunctional protein PutA | / | 0.459 | |
| 1oc1 | ASV | Isopenicillin N synthase | 1.21.3.1 | 0.458 | |
| 1qbg | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.458 | |
| 1rx0 | FAD | Isobutyryl-CoA dehydrogenase, mitochondrial | 1.3.99 | 0.458 | |
| 2cts | COA | Citrate synthase, mitochondrial | 2.3.3.1 | 0.458 | |
| 2g1r | 3IG | Renin | 3.4.23.15 | 0.458 | |
| 2ou2 | ACO | Histone acetyltransferase KAT5 | / | 0.458 | |
| 5cts | CMC | Citrate synthase, mitochondrial | 2.3.3.1 | 0.458 | |
| 1psa | 0ZL | Pepsin A | 3.4.23.1 | 0.457 | |
| 1r5g | AO1 | Methionine aminopeptidase 2 | / | 0.457 | |
| 1u7t | NAD | 3-hydroxyacyl-CoA dehydrogenase type-2 | 1.1.1.35 | 0.457 | |
| 2cf6 | NAP | Cinnamyl alcohol dehydrogenase 5 | 1.1.1.195 | 0.457 | |
| 2y6f | M9F | Isopenicillin N synthase | 1.21.3.1 | 0.457 | |
| 3b1d | PLS | BetaC-S lyase | / | 0.457 | |
| 3up0 | D7S | aceDAF-12 | / | 0.457 | |
| 3veu | 0GO | Beta-secretase 1 | 3.4.23.46 | 0.457 | |
| 4h8a | NAI | Ureidoglycolate dehydrogenase (NAD(+)) | 1.1.1.350 | 0.457 | |
| 4i6g | FAD | Cryptochrome-2 | / | 0.457 | |
| 4nv1 | 4TG | Formyl transferase | / | 0.457 | |
| 1sst | COA | Serine acetyltransferase | 2.3.1.30 | 0.456 | |
| 1zdw | FLV | Prenyltransferase | / | 0.456 | |
| 2nnl | NAP | Dihydroflavonol 4-reductase | 1.1.1.219 | 0.456 | |
| 2po7 | CHD | Ferrochelatase, mitochondrial | 4.99.1.1 | 0.456 | |
| 2rc4 | ACO | Histone acetyltransferase KAT6A | / | 0.456 | |
| 3ohh | 3HH | Beta-secretase 1 | 3.4.23.46 | 0.456 | |
| 3uzw | NAP | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.456 | |
| 3v9y | 24L | Peroxisome proliferator-activated receptor gamma | / | 0.456 | |
| 4bc7 | FAD | Alkyldihydroxyacetonephosphate synthase, peroxisomal | 2.5.1.26 | 0.456 | |
| 4bca | FAD | Alkyldihydroxyacetonephosphate synthase, peroxisomal | 2.5.1.26 | 0.456 | |
| 4ejm | NAP | Putative zinc-binding dehydrogenase | / | 0.456 | |
| 4lcj | NAD | C-terminal-binding protein 2 | / | 0.456 | |
| 1me6 | IVS | Plasmepsin-2 | 3.4.23.39 | 0.455 | |
| 1q5m | NDP | Prostaglandin-E(2) 9-reductase | 1.1.1.189 | 0.455 | |
| 2ien | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.455 | |
| 2ob0 | ACO | N-alpha-acetyltransferase 50 | / | 0.455 | |
| 2yxu | ATP | Pyridoxal kinase | 2.7.1.35 | 0.455 | |
| 3gu8 | 3GU | Death-associated protein kinase 1 | 2.7.11.1 | 0.455 | |
| 3k4n | FAD | Pyranose 2-oxidase | / | 0.455 | |
| 3qwb | NDP | Probable quinone oxidoreductase | 1.6.5.5 | 0.455 | |
| 4l1x | NAP | Aldo-keto reductase family 1 member C2 | / | 0.455 | |
| 1dxo | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.454 | |
| 1kkq | 471 | Peroxisome proliferator-activated receptor alpha | / | 0.454 | |
| 1nbi | SAM | Glycine N-methyltransferase | 2.1.1.20 | 0.454 | |
| 2b4r | AES | Glyceraldehyde-3-phosphate dehydrogenase | / | 0.454 | |
| 2e0n | SAH | Precorrin-2 C20-methyltransferase | / | 0.454 | |
| 3lpk | Z76 | Beta-secretase 1 | 3.4.23.46 | 0.454 | |
| 3pdq | KC6 | Lysine-specific demethylase 4A | 1.14.11 | 0.454 | |
| 3qgf | 46F | Genome polyprotein | 2.7.7.48 | 0.454 | |
| 3rud | NAD | UDP-N-acetylglucosamine 4-epimerase | / | 0.454 | |
| 4g7g | VFV | Lanosterol 14-alpha-demethylase | / | 0.454 | |
| 4ku5 | DCC | 3-oxoacyl-[ACP] synthase III | / | 0.454 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.454 | |
| 1gee | NAD | Glucose 1-dehydrogenase | 1.1.1.47 | 0.453 | |
| 1n2s | NAI | dTDP-4-dehydrorhamnose reductase | 1.1.1.133 | 0.453 | |
| 2c27 | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.453 | |
| 2wf4 | ZY4 | Beta-secretase 1 | 3.4.23.46 | 0.453 | |
| 2xvi | FAD | Putative flavin-containing monooxygenase | / | 0.453 | |
| 2y0m | ACO | Histone acetyltransferase KAT8 | / | 0.453 | |
| 3ad9 | NAD | Subunit alpha of sarocosine oxidase | / | 0.453 | |
| 3mpj | FAD | Glutaryl-CoA dehydrogenase | 1.3.99.32 | 0.453 | |
| 4ge7 | 0K5 | Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial | 2.6.1.39 | 0.453 | |
| 4phl | PIL | Phosphodiesterase | / | 0.453 | |
| 5dp2 | NAP | CurF | / | 0.453 | |
| 5eai | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.453 | |
| 1qlh | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.452 | |
| 1uzw | CDH | Isopenicillin N synthase | 1.21.3.1 | 0.452 | |
| 2iku | LIY | Renin | 3.4.23.15 | 0.452 | |
| 3bg7 | FAD | Pyranose 2-oxidase | / | 0.452 | |
| 3dm6 | 757 | Beta-secretase 1 | 3.4.23.46 | 0.452 | |
| 3wag | TYD | Glycosyltransferase | / | 0.452 | |
| 4an4 | DUD | Putative glycosyl transferase | / | 0.452 | |
| 4b68 | FAD | L-ornithine N(5)-monooxygenase | / | 0.452 | |
| 4n3r | 2GU | Tankyrase-1 | 2.4.2.30 | 0.452 | |
| 4ubv | COA | Steroid 3-ketoacyl-CoA thiolase | / | 0.452 | |
| 1dxq | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.451 | |
| 1hyg | NAP | L-2-hydroxycarboxylate dehydrogenase (NAD(P)(+)) | / | 0.451 | |
| 1pnv | TYD | dTDP-epi-vancosaminyltransferase | 2.4.1.311 | 0.451 | |
| 1qiq | ACC | Isopenicillin N synthase | 1.21.3.1 | 0.451 | |
| 1x7h | NDP | Putative ketoacyl reductase | 1.3.1 | 0.451 | |
| 2ewm | NAD | (S)-1-Phenylethanol dehydrogenase | 1.1.1.311 | 0.451 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.451 | |
| 2zev | B71 | Geranylgeranyl pyrophosphate synthase | / | 0.451 | |
| 3bgc | LJH | Gag-Pol polyprotein | 3.4.23.16 | 0.451 | |
| 3ggs | 2FD | Purine nucleoside phosphorylase | 2.4.2.1 | 0.451 | |
| 3q8u | ADP | Nucleoside diphosphate kinase | / | 0.451 | |
| 3uyl | TYD | Probable NDP-rhamnosyltransferase | / | 0.451 | |
| 4a8v | 2AN | Major pollen allergen Bet v 1-J | / | 0.451 | |
| 4dpf | 0LG | Beta-secretase 1 | 3.4.23.46 | 0.451 | |
| 4ejn | 0R4 | RAC-alpha serine/threonine-protein kinase | 2.7.11.1 | 0.451 | |
| 4wji | NAP | Putative cyclohexadienyl dehydrogenase and ADH prephenate dehydrogenase | / | 0.451 | |
| 4yai | NAI | C alpha-dehydrogenase | / | 0.451 | |
| 5jsc | FAD | Putative acyl-CoA dehydrogenase | / | 0.451 | |
| 1esv | LAR | Actin, alpha skeletal muscle | / | 0.450 | |
| 1jqi | FAD | Short-chain specific acyl-CoA dehydrogenase, mitochondrial | / | 0.450 | |
| 1mjb | ACO | Histone acetyltransferase ESA1 | / | 0.450 | |
| 2bu9 | HFV | Isopenicillin N synthase | 1.21.3.1 | 0.450 | |
| 2c12 | FAD | Nitroalkane oxidase | 1.7.3.1 | 0.450 | |
| 3bi5 | FAD | Polyamine oxidase FMS1 | / | 0.450 | |
| 3g72 | A6T | Renin | 3.4.23.15 | 0.450 | |
| 3gw9 | VNI | Lanosterol 14-alpha-demethylase | / | 0.450 | |
| 3i0p | NAD | Malate dehydrogenase, putative | / | 0.450 | |
| 3mpi | FAD | Glutaryl-CoA dehydrogenase | 1.3.99.32 | 0.450 | |
| 3owa | FAD | Acyl-CoA dehydrogenase | / | 0.450 | |
| 1t9g | FAD | Medium-chain specific acyl-CoA dehydrogenase, mitochondrial | 1.3.8.7 | 0.449 | |
| 2gf6 | COA | Uncharacterized protein | / | 0.449 | |
| 2ozu | ACO | Histone acetyltransferase KAT6A | / | 0.449 | |
| 2xgs | 44P | Uncharacterized protein | / | 0.449 | |
| 2ym2 | NAP | Phenylacetone monooxygenase | 1.14.13.92 | 0.449 | |
| 3bl7 | DD1 | m7GpppX diphosphatase | 3.6.1.59 | 0.449 | |
| 3d2p | COA | Amino-acid acetyltransferase | / | 0.449 | |
| 3wcz | NAP | Aldo-keto reductase AKR2E4 | / | 0.449 | |
| 3zhs | TD6 | Multifunctional 2-oxoglutarate metabolism enzyme | 1.2.4.2 | 0.449 | |
| 4c7k | NAP | Corticosteroid 11-beta-dehydrogenase isozyme 1 | 1.1.1.146 | 0.449 | |
| 1bim | 0QB | Renin | 3.4.23.15 | 0.448 | |
| 1ju2 | FAD | (R)-mandelonitrile lyase 2 | 4.1.2.10 | 0.448 | |
| 1o8c | NDP | Probable acrylyl-CoA reductase AcuI | 1.3.1.84 | 0.448 | |
| 1qy8 | RDI | Endoplasmin | / | 0.448 | |
| 3bv7 | NAP | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.448 | |
| 3dme | FAD | Putative conserved exported protein | / | 0.448 | |
| 3jsw | JAR | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.448 | |
| 3o26 | NDP | Salutaridine reductase | / | 0.448 | |
| 3rpe | FAD | Putative modulator of drug activity | / | 0.448 | |
| 3te5 | NAI | 5'-AMP-activated protein kinase subunit gamma | / | 0.448 | |
| 3uwl | FOZ | Thymidylate synthase | / | 0.448 | |
| 4bcr | WY1 | Peroxisome proliferator-activated receptor alpha | / | 0.448 | |
| 4blr | UTP | NTPase P4 | / | 0.448 | |
| 4qi4 | FAD | Cellobiose dehydrogenase | / | 0.448 | |
| 5af7 | FAD | Acyl-CoA dehydrogenase | / | 0.448 | |
| 5dmh | ADP | 3-oxo-tetronate kinase | / | 0.448 | |
| 3pbl | ETQ | D(3) dopamine receptor | / | 0.448 | |
| 1q20 | PLO | Sulfotransferase family cytosolic 2B member 1 | 2.8.2.2 | 0.447 | |
| 2a94 | AP0 | L-lactate dehydrogenase | 1.1.1.27 | 0.447 | |
| 2c29 | NAP | Dihydroflavonol 4-reductase | / | 0.447 | |
| 2fa3 | ACO | Hydroxymethylglutaryl-CoA synthase | / | 0.447 | |
| 2hrc | CHD | Ferrochelatase, mitochondrial | 4.99.1.1 | 0.447 | |
| 2j3q | TFL | Acetylcholinesterase | 3.1.1.7 | 0.447 | |
| 2tct | CTC | Tetracycline repressor protein class D | / | 0.447 | |
| 2ztm | NAD | D(-)-3-hydroxybutyrate dehydrogenase | / | 0.447 | |
| 3q43 | D66 | M1 family aminopeptidase | 3.4.11 | 0.447 | |
| 4jx1 | CAH | Camphor 5-monooxygenase | 1.14.15.1 | 0.447 | |
| 1cf3 | FAD | Glucose oxidase | 1.1.3.4 | 0.446 | |
| 1dxy | NAD | D-2-hydroxyisocaproate dehydrogenase | 1.1.1 | 0.446 | |
| 1h5q | NAP | NADP-dependent mannitol dehydrogenase | 1.1.1.138 | 0.446 | |
| 2gdz | NAD | 15-hydroxyprostaglandin dehydrogenase [NAD(+)] | 1.1.1.141 | 0.446 | |
| 2vbp | VB1 | Isopenicillin N synthase | 1.21.3.1 | 0.446 | |
| 3dgh | FAD | Thioredoxin reductase 1, mitochondrial | 1.8.1.9 | 0.446 | |
| 3doc | NAD | Glyceraldehyde-3-phosphate dehydrogenase | / | 0.446 | |
| 3i59 | N6S | CRP-like cAMP-activated global transcriptional regulator | / | 0.446 | |
| 3lqf | NAD | Galactitol dehydrogenase | / | 0.446 | |
| 3pm1 | ET | HTH-type transcriptional regulator QacR | / | 0.446 | |
| 3uoy | FAD | 2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase | 1.14.13.160 | 0.446 | |
| 4dpw | AGS | Mevalonate diphosphate decarboxylase | / | 0.446 | |
| 4g2j | 0WF | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.446 | |
| 4z26 | FAD | Putative GMC-type oxidoreductase R135 | 1 | 0.446 | |
| 5idw | NAP | Short-chain dehydrogenase/reductase SDR | / | 0.446 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.445 | |
| 2a0w | DIH | Purine nucleoside phosphorylase | 2.4.2.1 | 0.445 | |
| 2a4n | COA | Aac(6')-Ii protein | / | 0.445 | |
| 2hk9 | NAP | Shikimate dehydrogenase (NADP(+)) | / | 0.445 | |
| 2znn | S44 | Peroxisome proliferator-activated receptor alpha | / | 0.445 | |
| 3d91 | REM | Renin | 3.4.23.15 | 0.445 | |
| 3lpj | Z75 | Beta-secretase 1 | 3.4.23.46 | 0.445 | |
| 3mj4 | FAD | UDP-galactopyranose mutase | / | 0.445 | |
| 3mkh | FAD | Nitroalkane oxidase | / | 0.445 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.445 | |
| 3v2u | ATP | Protein GAL3 | / | 0.445 | |
| 4fdn | FAD | Decaprenylphosphoryl-beta-D-ribose oxidase | / | 0.445 | |
| 4j0v | 1H7 | Beta-secretase 1 | 3.4.23.46 | 0.445 | |
| 4q73 | FAD | Bifunctional protein PutA | / | 0.445 | |
| 1blz | ACV | Isopenicillin N synthase | 1.21.3.1 | 0.444 | |
| 1rfv | ADP | Pyridoxal kinase | 2.7.1.35 | 0.444 | |
| 2c1b | CQP | cAMP-dependent protein kinase catalytic subunit alpha | 2.7.11.11 | 0.444 | |
| 2fto | CB3 | Thymidylate synthase | / | 0.444 | |
| 2g1n | 1IG | Renin | 3.4.23.15 | 0.444 | |
| 2y60 | M8F | Isopenicillin N synthase | 1.21.3.1 | 0.444 | |
| 2ym1 | FAD | Phenylacetone monooxygenase | 1.14.13.92 | 0.444 | |
| 3dop | NAP | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.444 | |
| 3r5y | F42 | Uncharacterized protein | / | 0.444 | |
| 4irn | FAD | AnaB | / | 0.444 | |
| 4j7u | NAP | Sepiapterin reductase | 1.1.1.153 | 0.444 | |
| 4ri1 | ACO | UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase | 2.3.1.202 | 0.444 | |
| 1hdr | NAD | Dihydropteridine reductase | 1.5.1.34 | 0.443 | |
| 1x1b | SAH | C-20 methyltransferase | / | 0.443 | |
| 1y0s | 331 | Peroxisome proliferator-activated receptor delta | / | 0.443 | |
| 2c0c | NAP | Prostaglandin reductase 3 | 1 | 0.443 | |
| 2ekp | NAD | 2-deoxy-D-gluconate 3-dehydrogenase | / | 0.443 | |
| 2j3j | HC4 | NADPH-dependent oxidoreductase 2-alkenal reductase | 1.3.1.74 | 0.443 | |
| 2pnj | CHD | Ferrochelatase, mitochondrial | 4.99.1.1 | 0.443 | |
| 2wp9 | CBE | Succinate dehydrogenase iron-sulfur subunit | 1.3.5.1 | 0.443 | |
| 2wp9 | CBE | Succinate dehydrogenase cytochrome b556 subunit | / | 0.443 | |
| 3buv | NAP | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.443 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.443 | |
| 3k3e | PDB | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.443 | |
| 3lsi | FAD | Pyranose 2-oxidase | / | 0.443 | |
| 3skg | PB8 | Beta-secretase 1 | 3.4.23.46 | 0.443 | |
| 3tox | NAP | Putative oxidoreductase | / | 0.443 | |
| 4bby | FAD | Alkyldihydroxyacetonephosphate synthase, peroxisomal | 2.5.1.26 | 0.443 | |
| 4eud | COA | Succinyl-CoA:acetate CoA-transferase | / | 0.443 | |
| 4qof | FMN | Ribosyldihydronicotinamide dehydrogenase [quinone] | / | 0.443 | |
| 5kwv | ANP | Pantothenate synthetase | / | 0.443 | |
| 1csc | CMC | Citrate synthase, mitochondrial | 2.3.3.1 | 0.442 | |
| 1ege | FAD | Medium-chain specific acyl-CoA dehydrogenase, mitochondrial | 1.3.8.7 | 0.442 | |
| 1fds | EST | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.442 | |
| 2cgw | 3C3 | Serine/threonine-protein kinase Chk1 | 2.7.11.1 | 0.442 | |
| 2ch6 | ADP | N-acetyl-D-glucosamine kinase | 2.7.1.59 | 0.442 | |
| 2q1w | NAD | Putative nucleotide sugar epimerase/ dehydratase | / | 0.442 | |
| 2rbe | NDP | Corticosteroid 11-beta-dehydrogenase isozyme 1 | 1.1.1.146 | 0.442 | |
| 2y3r | TRK | TamL | / | 0.442 | |
| 3flk | NAI | Tartrate dehydrogenase/decarboxylase | 1.1.1.93 | 0.442 | |
| 3qe2 | FMN | NADPH--cytochrome P450 reductase | / | 0.442 | |
| 3r6s | CMP | CRP-like cAMP-activated global transcriptional regulator | / | 0.442 | |
| 4dja | FAD | (6-4) photolyase | / | 0.442 | |
| 4fc7 | NAP | Peroxisomal 2,4-dienoyl-CoA reductase | 1.3.1.34 | 0.442 | |
| 4ge4 | 0KE | Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial | 2.6.1.39 | 0.442 | |
| 4gh6 | LUO | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.442 | |
| 4jtq | NAP | Aldo-keto reductase family 1 member C2 | / | 0.442 | |
| 4lj6 | ACP | Chaperone protein ClpB | / | 0.442 | |
| 4nu5 | NAD | Phosphonate dehydrogenase | 1.20.1.1 | 0.442 | |
| 4tm1 | FDA | KtzI | / | 0.442 | |
| 4y93 | 746 | Tyrosine-protein kinase | / | 0.442 | |
| 4z63 | ILE_THR_GLN_TYS_TYS | Phytosulfokine receptor 1 | 2.7.11.1 | 0.442 | |
| 1lf2 | R37 | Plasmepsin-2 | 3.4.23.39 | 0.441 | |
| 1osv | CHC | Bile acid receptor | / | 0.441 | |
| 1w4a | APC | NTPase P4 | / | 0.441 | |
| 1zga | HMK | Isoflavone 4'-O-methyltransferase | / | 0.441 | |
| 2ge3 | ACO | Probable acetyltransferase | / | 0.441 | |
| 2h9i | EAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.441 | |
| 2hej | NDP | Aldo-keto reductase family 1 member C21 | 1.1.1 | 0.441 | |
| 2uzf | CAA | 1,4-dihydroxy-2-naphthoyl-CoA synthase | / | 0.441 | |
| 2xpv | MIY | Tetracycline repressor protein class D | / | 0.441 | |
| 2ylt | FAD | Phenylacetone monooxygenase | 1.14.13.92 | 0.441 | |
| 3csc | ACO | Citrate synthase, mitochondrial | 2.3.3.1 | 0.441 | |
| 3cz7 | ACO | Histone acetyltransferase RTT109 | 2.3.1.48 | 0.441 | |
| 3dv3 | MEK | Dual specificity mitogen-activated protein kinase kinase 1 | 2.7.12.2 | 0.441 | |
| 3gy0 | NAP | NAD(P)-dependent oxidoreductase | / | 0.441 | |
| 3mb7 | 14I | Casein kinase II subunit alpha | 2.7.11.1 | 0.441 | |
| 4a87 | NAR | Major pollen allergen Bet v 1-A | / | 0.441 | |
| 4dbz | NDP | Putative ketoacyl reductase | 1.3.1 | 0.441 | |
| 4djy | 0KR | Beta-secretase 1 | 3.4.23.46 | 0.441 | |
| 4mo2 | FAD | UDP-galactopyranose mutase | / | 0.441 | |
| 4ryv | ZEA | Protein LlR18A | / | 0.441 | |
| 4wdf | A2P | 2',3'-cyclic-nucleotide 3'-phosphodiesterase | 3.1.4.37 | 0.441 | |
| 4xgi | NAD | Glutamate dehydrogenase | / | 0.441 | |
| 5doz | NDP | JamJ | / | 0.441 | |
| 1iy8 | NAD | Levodione reductase | / | 0.440 | |
| 1ps9 | MDE | 2,4-dienoyl-CoA reductase | 1.3.1.34 | 0.440 | |
| 1v0j | FAD | UDP-galactopyranose mutase | 5.4.99.9 | 0.440 | |
| 1yb5 | NAP | Quinone oxidoreductase | 1.6.5.5 | 0.440 | |
| 2iko | 7IG | Renin | 3.4.23.15 | 0.440 | |
| 2qbu | SAH | Precorrin-2 methyltransferase | / | 0.440 | |
| 2vig | FAD | Short-chain specific acyl-CoA dehydrogenase, mitochondrial | 1.3.8.1 | 0.440 | |
| 2xf0 | 4UB | Serine/threonine-protein kinase Chk1 | 2.7.11.1 | 0.440 | |
| 3b6z | CO7 | Enoyl reductase LovC | 1 | 0.440 | |
| 3jzi | JZL | Biotin carboxylase | 6.3.4.14 | 0.440 | |
| 3p62 | FMN | Pentaerythritol tetranitrate reductase | / | 0.440 | |
| 3qv1 | NAD | Glyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic | 1.2.1.13 | 0.440 | |
| 3ru7 | NAD | UDP-N-acetylglucosamine 4-epimerase | / | 0.440 | |
| 4e2y | JHZ | Methyltransferase | / | 0.440 | |
| 4jq3 | NAP | Aldo-keto reductase family 1 member C2 | / | 0.440 | |
| 4l4x | NDP | AmphI | / | 0.440 | |
| 4m9a | FDA | Acyl-CoA dehydrogenase | / | 0.440 | |
| 4rvf | TYD | D-mycarose 3-C-methyltransferase | / | 0.440 |