2.000 Å
X-ray
2003-10-10
Name: | Methionine aminopeptidase 2 |
---|---|
ID: | MAP2_HUMAN |
AC: | P50579 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 15.437 |
---|---|
Number of residues: | 33 |
Including | |
Standard Amino Acids: | 31 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | MN MN |
Ligandability | Volume (Å3) |
---|---|
0.978 | 479.250 |
% Hydrophobic | % Polar |
---|---|
58.45 | 41.55 |
According to VolSite |
HET Code: | AO1 |
---|---|
Formula: | C19H27N2O2S |
Molecular weight: | 347.495 g/mol |
DrugBank ID: | DB04108 |
Buried Surface Area: | 63.08 % |
Polar Surface area: | 102.27 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 3 |
H-Bond Donors: | 3 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
16.8637 | 29.6331 | 18.116 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
S3 | CB | PHE- 219 | 3.98 | 0 | Hydrophobic |
C14 | CD2 | LEU- 328 | 3.5 | 0 | Hydrophobic |
C22 | CB | HIS- 331 | 3.84 | 0 | Hydrophobic |
C4 | CG1 | ILE- 338 | 3.76 | 0 | Hydrophobic |
C6 | CD1 | ILE- 338 | 4.38 | 0 | Hydrophobic |
O13 | NE2 | HIS- 339 | 3.25 | 154.86 | H-Bond (Protein Donor) |
DuAr | DuAr | HIS- 339 | 3.69 | 0 | Aromatic Face/Face |
DuAr | DuAr | HIS- 339 | 3.89 | 0 | Aromatic Face/Face |
C20 | CB | HIS- 339 | 4.18 | 0 | Hydrophobic |
C22 | CG2 | THR- 343 | 3.98 | 0 | Hydrophobic |
O24 | OE2 | GLU- 364 | 2.52 | 156.66 | H-Bond (Ligand Donor) |
C2 | CE | MET- 384 | 3.88 | 0 | Hydrophobic |
C2 | CB | ALA- 414 | 3.79 | 0 | Hydrophobic |
C1 | CG | TYR- 444 | 3.34 | 0 | Hydrophobic |
O24 | MN | MN- 480 | 2.29 | 0 | Metal Acceptor |
O13 | MN | MN- 481 | 2.27 | 0 | Metal Acceptor |
O24 | MN | MN- 481 | 2.21 | 0 | Metal Acceptor |