2.100 Å
X-ray
2013-05-02
| Name: | Glycosyltransferase |
|---|---|
| ID: | Q76KZ6_STRHA |
| AC: | Q76KZ6 |
| Organism: | Streptomyces halstedii |
| Reign: | Bacteria |
| TaxID: | 1944 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 34.117 |
|---|---|
| Number of residues: | 27 |
| Including | |
| Standard Amino Acids: | 26 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.211 | 864.000 |
| % Hydrophobic | % Polar |
|---|---|
| 48.05 | 51.95 |
| According to VolSite | |

| HET Code: | TYD |
|---|---|
| Formula: | C10H13N2O11P2 |
| Molecular weight: | 399.165 g/mol |
| DrugBank ID: | DB03103 |
| Buried Surface Area: | 55.85 % |
| Polar Surface area: | 220.27 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 11 |
| H-Bond Donors: | 2 |
| Rings: | 2 |
| Aromatic rings: | 0 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| -21.7578 | 37.0126 | 6.02468 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2A | OG | SER- 12 | 2.64 | 142.18 | H-Bond (Protein Donor) |
| C5' | CD2 | TYR- 15 | 4.09 | 0 | Hydrophobic |
| C1' | CB | ASN- 230 | 3.99 | 0 | Hydrophobic |
| C5M | CD1 | PHE- 304 | 4.34 | 0 | Hydrophobic |
| N3 | O | VAL- 305 | 2.52 | 175.93 | H-Bond (Ligand Donor) |
| O4 | N | VAL- 305 | 3.07 | 171.65 | H-Bond (Protein Donor) |
| O2 | N | LEU- 307 | 2.86 | 160.1 | H-Bond (Protein Donor) |
| C2' | CD2 | LEU- 307 | 3.68 | 0 | Hydrophobic |
| O3B | N | GLY- 324 | 2.91 | 142.79 | H-Bond (Protein Donor) |
| O3' | O | GLY- 324 | 3.43 | 130.04 | H-Bond (Ligand Donor) |
| O2B | N | THR- 325 | 2.63 | 154.33 | H-Bond (Protein Donor) |
| O2B | OG1 | THR- 325 | 2.58 | 151.14 | H-Bond (Protein Donor) |
| O3' | OD1 | ASN- 328 | 3.42 | 141.79 | H-Bond (Ligand Donor) |