2.100 Å
X-ray
2013-05-02
Name: | Glycosyltransferase |
---|---|
ID: | Q76KZ6_STRHA |
AC: | Q76KZ6 |
Organism: | Streptomyces halstedii |
Reign: | Bacteria |
TaxID: | 1944 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 34.117 |
---|---|
Number of residues: | 27 |
Including | |
Standard Amino Acids: | 26 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.211 | 864.000 |
% Hydrophobic | % Polar |
---|---|
48.05 | 51.95 |
According to VolSite |
HET Code: | TYD |
---|---|
Formula: | C10H13N2O11P2 |
Molecular weight: | 399.165 g/mol |
DrugBank ID: | DB03103 |
Buried Surface Area: | 55.85 % |
Polar Surface area: | 220.27 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 11 |
H-Bond Donors: | 2 |
Rings: | 2 |
Aromatic rings: | 0 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-21.7578 | 37.0126 | 6.02468 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2A | OG | SER- 12 | 2.64 | 142.18 | H-Bond (Protein Donor) |
C5' | CD2 | TYR- 15 | 4.09 | 0 | Hydrophobic |
C1' | CB | ASN- 230 | 3.99 | 0 | Hydrophobic |
C5M | CD1 | PHE- 304 | 4.34 | 0 | Hydrophobic |
N3 | O | VAL- 305 | 2.52 | 175.93 | H-Bond (Ligand Donor) |
O4 | N | VAL- 305 | 3.07 | 171.65 | H-Bond (Protein Donor) |
O2 | N | LEU- 307 | 2.86 | 160.1 | H-Bond (Protein Donor) |
C2' | CD2 | LEU- 307 | 3.68 | 0 | Hydrophobic |
O3B | N | GLY- 324 | 2.91 | 142.79 | H-Bond (Protein Donor) |
O3' | O | GLY- 324 | 3.43 | 130.04 | H-Bond (Ligand Donor) |
O2B | N | THR- 325 | 2.63 | 154.33 | H-Bond (Protein Donor) |
O2B | OG1 | THR- 325 | 2.58 | 151.14 | H-Bond (Protein Donor) |
O3' | OD1 | ASN- 328 | 3.42 | 141.79 | H-Bond (Ligand Donor) |