3.000 Å
X-ray
2013-10-11
Name: | Uncharacterized protein |
---|---|
ID: | I1KHY6_SOYBN |
AC: | I1KHY6 |
Organism: | Glycine max |
Reign: | Eukaryota |
TaxID: | 3847 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 54 % |
E | 46 % |
B-Factor: | 66.370 |
---|---|
Number of residues: | 37 |
Including | |
Standard Amino Acids: | 37 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.296 | 1360.125 |
% Hydrophobic | % Polar |
---|---|
53.10 | 46.90 |
According to VolSite |
HET Code: | COA |
---|---|
Formula: | C21H32N7O16P3S |
Molecular weight: | 763.502 g/mol |
DrugBank ID: | DB01992 |
Buried Surface Area: | 35.89 % |
Polar Surface area: | 426.11 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 21 |
H-Bond Donors: | 6 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 18 |
X | Y | Z |
---|---|---|
-48.9502 | -40.1423 | -56.1074 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
S1P | CG1 | VAL- 174 | 4.37 | 0 | Hydrophobic |
C6P | CD1 | LEU- 188 | 3.71 | 0 | Hydrophobic |
C2P | CD1 | LEU- 188 | 4.44 | 0 | Hydrophobic |
C6P | CD1 | LEU- 220 | 4.34 | 0 | Hydrophobic |
O4A | NZ | LYS- 230 | 3.97 | 0 | Ionic (Protein Cationic) |
O5A | NZ | LYS- 230 | 3.06 | 0 | Ionic (Protein Cationic) |
O5A | NZ | LYS- 230 | 3.06 | 165.43 | H-Bond (Protein Donor) |
O6A | NZ | LYS- 230 | 3.38 | 121.46 | H-Bond (Protein Donor) |
O9P | N | ALA- 233 | 3.01 | 132.66 | H-Bond (Protein Donor) |
C2B | CD1 | LEU- 238 | 4.38 | 0 | Hydrophobic |
CDP | CG2 | THR- 246 | 4.32 | 0 | Hydrophobic |