3.000 Å
X-ray
2013-10-11
| Name: | Uncharacterized protein |
|---|---|
| ID: | I1KHY6_SOYBN |
| AC: | I1KHY6 |
| Organism: | Glycine max |
| Reign: | Eukaryota |
| TaxID: | 3847 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 54 % |
| E | 46 % |
| B-Factor: | 66.370 |
|---|---|
| Number of residues: | 37 |
| Including | |
| Standard Amino Acids: | 37 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.296 | 1360.125 |
| % Hydrophobic | % Polar |
|---|---|
| 53.10 | 46.90 |
| According to VolSite | |

| HET Code: | COA |
|---|---|
| Formula: | C21H32N7O16P3S |
| Molecular weight: | 763.502 g/mol |
| DrugBank ID: | DB01992 |
| Buried Surface Area: | 35.89 % |
| Polar Surface area: | 426.11 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 21 |
| H-Bond Donors: | 6 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 3 |
| Rotatable Bonds: | 18 |
| X | Y | Z |
|---|---|---|
| -48.9502 | -40.1423 | -56.1074 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| S1P | CG1 | VAL- 174 | 4.37 | 0 | Hydrophobic |
| C6P | CD1 | LEU- 188 | 3.71 | 0 | Hydrophobic |
| C2P | CD1 | LEU- 188 | 4.44 | 0 | Hydrophobic |
| C6P | CD1 | LEU- 220 | 4.34 | 0 | Hydrophobic |
| O4A | NZ | LYS- 230 | 3.97 | 0 | Ionic (Protein Cationic) |
| O5A | NZ | LYS- 230 | 3.06 | 0 | Ionic (Protein Cationic) |
| O5A | NZ | LYS- 230 | 3.06 | 165.43 | H-Bond (Protein Donor) |
| O6A | NZ | LYS- 230 | 3.38 | 121.46 | H-Bond (Protein Donor) |
| O9P | N | ALA- 233 | 3.01 | 132.66 | H-Bond (Protein Donor) |
| C2B | CD1 | LEU- 238 | 4.38 | 0 | Hydrophobic |
| CDP | CG2 | THR- 246 | 4.32 | 0 | Hydrophobic |