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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1luaNAPBifunctional protein MdtA1.5.1.5

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
1luaNAPBifunctional protein MdtA1.5.1.51.000
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.499
4trnNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.497
4fn4NADShort chain dehydrogenase/0.494
4nbtNAD3-oxoacyl-[acyl-carrier-protein] reductase/0.494
1hdcCBO3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase1.1.1.530.491
4i8zG08Gag-Pol polyprotein3.4.23.160.489
1xddAAYIntegrin alpha-L/0.486
1xe55FEPlasmepsin-23.4.23.390.481
2dteNAIGlucose 1-dehydrogenase related protein/0.481
4q71FADBifunctional protein PutA/0.481
4xnhACON-terminal acetyltransferase A complex subunit NAT52.3.10.481
2g1n1IGRenin3.4.23.150.480
5e5h0T1Succinyl-CoA:acetate CoA-transferase/0.479
2rbeNDPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.478
2ft9CHDFatty acid-binding protein 2, liver/0.476
3tjzGNPADP-ribosylation factor 1/0.476
3em0CHDFatty acid-binding protein 6, ileal (gastrotropin)/0.475
3qlsNDPDihydrofolate reductase1.5.1.30.475
1ma0NADAlcohol dehydrogenase class-31.1.1.10.474
3ijoB4DGlutamate receptor 2/0.473
4jlm1NNDeoxycytidine kinase2.7.1.740.473
4r21STRCytochrome P450 family 17 polypeptide 2/0.473
3em3478Gag-Pol polyprotein3.4.23.160.472
2pnjCHDFerrochelatase, mitochondrial4.99.1.10.471
2uxhQUEHTH-type transcriptional regulator TtgR/0.471
3b6zCO7Enoyl reductase LovC10.471
4anx534Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.471
4g7gVFVLanosterol 14-alpha-demethylase/0.471
4oxyNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.471
1e3eNAIAlcohol dehydrogenase 41.1.1.10.469
2aqiNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.469
2ewmNAD(S)-1-Phenylethanol dehydrogenase1.1.1.3110.469
2rcyNAPPyrroline-5-carboxylate reductase/0.469
2uxoTACHTH-type transcriptional regulator TtgR/0.469
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.468
1xl5190Gag-Pol polyprotein3.4.23.160.468
2ien017Gag-Pol polyprotein3.4.23.160.468
3bc3OPTCathepsin L13.4.22.150.468
1lbcCYZGlutamate receptor 2/0.467
1wwkNAD307aa long hypothetical phosphoglycerate dehydrogenase/0.467
2ou2ACOHistone acetyltransferase KAT5/0.467
3nxxNDPDihydrofolate reductase1.5.1.30.467
4g3jVNTLanosterol 14-alpha-demethylase/0.467
2aqhNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.466
2wyvNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.466
1vikBAYGag-Pol polyprotein/0.465
2e9dB76Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.465
2hdhNADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.465
3jv7NADSecondary alcohol dehydrogenase/0.465
2po7CHDFerrochelatase, mitochondrial4.99.1.10.464
4dtiNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.464
4ejvLCLTranscriptional regulator TcaR/0.464
3bhiNAPCarbonyl reductase [NADPH] 11.1.1.1840.463
3invNDPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.463
1bwsNDPGDP-L-fucose synthase/0.462
1tehNADAlcohol dehydrogenase class-31.1.1.10.462
1w2xRCPAcetyl-CoA carboxylase/0.462
2f4bEHAPeroxisome proliferator-activated receptor gamma/0.462
3r4b74TGag-Pol polyprotein/0.462
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.462
4kb9G79Protease/0.462
1ydtIQBcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.461
2gjlFMNNitronate monooxygenase1.13.12.160.461
2ztmNADD(-)-3-hydroxybutyrate dehydrogenase/0.461
4dreNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.461
4klaCHDFerrochelatase, mitochondrial4.99.1.10.461
1nzdUPGDNA beta-glucosyltransferase/0.460
2yyiFAD4-hydroxyphenylacetate 3-monooxygenase oxygenase component1.14.14.90.460
3to6LYS_CMCHistone acetyltransferase ESA1/0.460
4qi7FADCellobiose dehydrogenase/0.460
1tqf32PBeta-secretase 13.4.23.460.459
1tv8SAMGTP 3',8-cyclase4.1.99.180.459
2ejvNADL-threonine 3-dehydrogenase/0.459
2qd4CHDFerrochelatase, mitochondrial4.99.1.10.459
2zjmF1MBeta-secretase 13.4.23.460.459
3g5hYTTMycocyclosin synthase1.14.21.90.459
3of2NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.459
2aqkNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.458
4nbwNADShort-chain dehydrogenase/reductase SDR/0.458
4qi4FADCellobiose dehydrogenase/0.458
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.458
1fm4DXCMajor pollen allergen Bet v 1-L/0.457
1hygNAPL-2-hydroxycarboxylate dehydrogenase (NAD(P)(+))/0.457
1mj9COAHistone acetyltransferase ESA1/0.457
1pmn984Mitogen-activated protein kinase 102.7.11.240.457
1xkqNDPUncharacterized protein/0.457
2fy4COACholine O-acetyltransferase2.3.1.60.457
3bgbLJGGag-Pol polyprotein3.4.23.160.457
3cisATPUniversal stress protein Rv2623/0.457
3gw9VNILanosterol 14-alpha-demethylase/0.457
3ieuGDPGTPase Era/0.457
3jswJARHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.457
3kjsNAPBifunctional dihydrofolate reductase-thymidylate synthase/0.457
3r83Z14Cyclin-dependent kinase 22.7.11.220.457
4eudCOASuccinyl-CoA:acetate CoA-transferase/0.457
4oztP1AEcdysone receptor, putative/0.457
4z24FADPutative GMC-type oxidoreductase R13510.457
1geeNADGlucose 1-dehydrogenase1.1.1.470.456
1me6IVSPlasmepsin-23.4.23.390.456
1rm4NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.456
2fb2SAMGTP 3',8-cyclase4.1.99.180.456
3dgaNDPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.456
4cdmFO1Deoxyribodipyrimidine photolyase/0.456
1bvrNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.455
2q5g1FAPeroxisome proliferator-activated receptor delta/0.455
2y3rTRKTamL/0.455
2zb3NDPProstaglandin reductase 21.3.1.480.455
3t1tGDPProbable gliding protein mglA/0.455
4iqgNAPShort-chain dehydrogenase/reductase SDR/0.455
4rvuNDPProbable quinone reductase Qor (NADPH:quinone reductase) (Zeta-crystallin homolog protein)/0.455
1pkfEPDEpothilone C/D epoxidase1.140.454
1zidZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.454
3lzs017Gag-Pol polyprotein3.4.23.160.454
3oeyNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.454
3p6oETGCamphor 5-monooxygenase1.14.15.10.454
3qlrNDPDihydrofolate reductase1.5.1.30.454
4bfzZVZPantothenate kinase2.7.1.330.454
4gh6LUOHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.454
4m87NADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.454
4djhJDCKappa-type opioid receptor/0.454
3ad9NADSubunit alpha of sarocosine oxidase/0.453
3dy8IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.453
3jynNDPQuinone oxidoreductase/0.453
4jnkZHKL-lactate dehydrogenase A chain1.1.1.270.453
4kuhCAA3-hydroxybutyryl-CoA dehydrogenase/0.453
4xsvC5PEthanolamine-phosphate cytidylyltransferase2.7.7.140.453
1f8fNADBenzyl alcohol dehydrogenase/0.452
1nboNADGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.452
1rbqKEUTrifunctional purine biosynthetic protein adenosine-32.1.2.20.452
1wngSAHDiphthine synthase/0.452
2g1s4IGRenin3.4.23.150.452
2xc3RT8Steroid C26-monooxygenase1.14.13.1410.452
3d8xFADThioredoxin reductase 11.8.1.90.452
3oewNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.452
3slz3TLPutative gag-pro-pol polyprotein/0.452
4q73FADBifunctional protein PutA/0.452
1hbvGANGag-Pol polyprotein/0.451
1q23FUAChloramphenicol acetyltransferase2.3.1.280.451
2b37NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.451
2gmjFADElectron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial1.5.5.10.451
2iko7IGRenin3.4.23.150.451
2y0mACOHistone acetyltransferase KAT8/0.451
2y1tDUDSPBc2 prophage-derived deoxyuridine 5'-triphosphate nucleotidohydrolase YosS3.6.1.230.451
3b70NAPEnoyl reductase LovC10.451
3d64NADAdenosylhomocysteinase/0.451
4anuEM7Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.451
4oh4ANPProtein BRASSINOSTEROID INSENSITIVE 12.7.10.10.451
4qecNAPElxO/0.451
1ju2FAD(R)-mandelonitrile lyase 24.1.2.100.450
1tj1FADBifunctional protein PutA1.5.5.20.450
1yb5NAPQuinone oxidoreductase1.6.5.50.450
2gz7D3FOrf1a polyprotein/0.450
2uuvFADAlkyldihydroxyacetonephosphate synthase2.5.1.260.450
2uxuNARHTH-type transcriptional regulator TtgR/0.450
2x7hPFNProstaglandin reductase 310.450
3adaNADSubunit alpha of sarocosine oxidase/0.450
3d84NDPDihydrofolate reductase1.5.1.30.450
3hbbNAPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.450
3mpiFADGlutaryl-CoA dehydrogenase1.3.99.320.450
4biiPYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.450
4eu8COASuccinyl-CoA:acetate CoA-transferase/0.450
4fw8NAI3-oxoacyl-(Acyl-carrier-protein) reductase/0.450
4mdhNADMalate dehydrogenase, cytoplasmic1.1.1.370.450
4o1mNADEnoyl-acyl carrier reductase/0.450
5dozNDPJamJ/0.450
1c2tNHSPhosphoribosylglycinamide formyltransferase/0.449
1civNAPMalate dehydrogenase [NADP], chloroplastic1.1.1.820.449
2a94AP0L-lactate dehydrogenase1.1.1.270.449
2hqpNDPDihydrofolate reductase1.5.1.30.449
2nv6ZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.449
3docNADGlyceraldehyde-3-phosphate dehydrogenase/0.449
3lqfNADGalactitol dehydrogenase/0.449
3toxNAPPutative oxidoreductase/0.449
4gxs0YSGlutamate receptor 2/0.449
4iv6FDAIsovaleryl-CoA dehydrogenase/0.449
4jx1CAHCamphor 5-monooxygenase1.14.15.10.449
4wdgA2P2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.449
1mp0NADAlcohol dehydrogenase class-31.1.1.10.448
1xe65FPPlasmepsin-23.4.23.390.448
1z7yAA5Cysteine synthase 12.5.1.470.448
2aq8NAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.448
2f81017Gag-Pol polyprotein3.4.23.160.448
2qd3CHDFerrochelatase, mitochondrial4.99.1.10.448
3fhyATPPyridoxal kinase2.7.1.350.448
3ijdC2FMethylenetetrahydrofolate reductase/0.448
3pwm017Gag-Pol polyprotein3.4.23.160.448
3vqsJT1Genome polyprotein/0.448
3wmxNADNAD dependent epimerase/dehydratase/0.448
3zbrNAP2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.448
3zdfNADGlyceraldehyde-3-phosphate dehydrogenase/0.448
4bgePYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.448
4z61ILE_THR_GLN_TYS_TYSPhytosulfokine receptor 12.7.11.10.448
1dr3TAPDihydrofolate reductase1.5.1.30.447
1kkq471Peroxisome proliferator-activated receptor alpha/0.447
1rc0KT5Trifunctional purine biosynthetic protein adenosine-32.1.2.20.447
2d29FADAcyl-CoA dehydrogenase/0.447
2ie0ZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.447
3vx4ATPPutative ABC transporter, ATP-binding protein ComA/0.447
4hbgNDP3-oxoacyl-[acyl-carrier-protein] reductase1.1.1.1000.447
4ri1ACOUDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase2.3.1.2020.447
4uymVOR14-alpha sterol demethylase Cyp51B/0.447
4zirANPEnergy-coupling factor transporter ATP-binding protein EcfA23.6.30.447
4zirANPEnergy-coupling factor transporter ATP-binding protein EcfA1/0.447
5hg0SAMPantothenate synthetase/0.447
1d3hA26Dihydroorotate dehydrogenase (quinone), mitochondrial1.3.5.20.446
1ha3MAUElongation factor Tu-A/0.446
1qlhNADAlcohol dehydrogenase E chain1.1.1.10.446
2ejzSAHDiphthine synthase/0.446
2he5NDPAldo-keto reductase family 1 member C211.1.10.446
2jb4A14Isopenicillin N synthase1.21.3.10.446
2ntvP1HEnoyl-[acyl-carrier-protein] reductase [NADH]/0.446
2yylFAD4-hydroxyphenylacetate 3-monooxygenase oxygenase component1.14.14.90.446
2z54AB1Gag-Pol polyprotein3.4.23.160.446
3bmoNAPPteridine reductase/0.446
3clbNAPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.446
3o9gF53Gag-Pol polyprotein/0.446
3t2zFADSulfide-quinone reductase/0.446
4ge70K5Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.446
4jjiNADAlcohol dehydrogenase class-3/0.446
4loi1YCStimulator of interferon genes protein/0.446
5b1yNDP3-oxoacyl-[acyl-carrier-protein] reductase/0.446
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.445
1n4pCYS_VAL_ILE_LEU_GERGeranylgeranyl transferase type-1 subunit beta2.5.1.590.445
2fgjATPAlpha-hemolysin translocation ATP-binding protein HlyB/0.445
2givACOHistone acetyltransferase KAT8/0.445
2gnfY27cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.445
2h9iEADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.445
2hrcCHDFerrochelatase, mitochondrial4.99.1.10.445
2p3b3TLV-1 PROTEASE protein/0.445
2p3b3TLV-1 protease/0.445
2uztSS3cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.445
2y3sTIRTamL/0.445
3gbuATPUncharacterized sugar kinase PH14592.7.10.445
3i25MV7Beta-secretase 13.4.23.460.445
3ixp834Ecdysone receptor/0.445
3livE16Protease/0.445
3zkyWT4Isopenicillin N synthase1.21.3.10.445
4dh60KNBeta-secretase 13.4.23.460.445
4er6AW2Histone-lysine N-methyltransferase, H3 lysine-79 specific2.1.1.430.445
4is3NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 21.17.98.10.445
4y8wSTRSteroid 21-hydroxylase/0.445
1enyNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.444
1g63FMNEpidermin decarboxylase4.1.10.444
1mjbACOHistone acetyltransferase ESA1/0.444
1pjcNADAlanine dehydrogenase/0.444
1t57FMNConserved protein/0.444
2huvSAHDiphthine synthase/0.444
2yxuATPPyridoxal kinase2.7.1.350.444
3dbvNADGlyceraldehyde-3-phosphate dehydrogenase/0.444
3h86AP5Adenylate kinase/0.444
4gdy0X1Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.444
4hbm0Y7E3 ubiquitin-protein ligase Mdm26.3.20.444
4opgFDAConserved Archaeal protein/0.444
4tuvCPZCytochrome P450 1191.140.444
4wriOKAOkadaic acid binding protein 2-alpha/0.444
4zjuNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.444
5ftfADPTPR domain protein/0.444
1e5qNDPSaccharopine dehydrogenase [NADP(+), L-glutamate-forming]1.5.1.100.443
1gcoNADGlucose 1-dehydrogenase1.1.1.470.443
1i5rHYCEstradiol 17-beta-dehydrogenase 11.1.1.620.443
1kzkJE2Gag-Pol polyprotein3.4.23.160.443
2uzvSS5cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.443
3k3hBYEHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.443
3r3sNADPutative oxidoreductase/0.443
4bfvZVVPantothenate kinase2.7.1.330.443
4j7uNAPSepiapterin reductase1.1.1.1530.443
1h5qNAPNADP-dependent mannitol dehydrogenase1.1.1.1380.442
1ipeNDPTropinone reductase 21.1.1.2360.442
1w6hTITPlasmepsin-23.4.23.390.442
2a92NAIL-lactate dehydrogenase/0.442
2c1bCQPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.442
3ajrNADNDP-sugar epimerase/0.442
3dylPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.442
3gegNADShort-chain dehydrogenase/reductase SDR/0.442
3kb1ADPIron-sulfur cluster carrier protein/0.442
3lpiZ74Beta-secretase 13.4.23.460.442
3ocpCMPcGMP-dependent protein kinase 12.7.11.120.442
3omuIBDHeat shock protein 83/0.442
3pqbVGPPutative oxidoreductase/0.442
3qwbNDPProbable quinone oxidoreductase1.6.5.50.442
4ambDUDPutative glycosyl transferase/0.442
4e5yNDPGDP-L-fucose synthase1.1.1.2710.442
4f07FADStyrene monooxygenase component 2/0.442
4fryNADPutative signal-transduction protein with CBS domains/0.442
4lxhC1EAlpha/beta hydrolase fold/0.442
4ohxADPProtein clpf-1/0.442
4z63ILE_THR_GLN_TYS_TYSPhytosulfokine receptor 12.7.11.10.442
5d3qGDPDynamin-13.6.5.50.442
1ia1NDPDihydrofolate reductase1.5.1.30.441
1joaFADNADH peroxidase1.11.1.10.441
1kboFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.441
1m78NDPDihydrofolate reductase1.5.1.30.441
1q8uH52cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.441
2fonFADAcyl-coenzyme A oxidase/0.441
2ikuLIYRenin3.4.23.150.441
2xtnGTPGTPase IMAP family member 2/0.441
3b8z294A disintegrin and metalloproteinase with thrombospondin motifs 53.4.240.441
3lvfNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.441
3o9hK2EGag-Pol polyprotein/0.441
3ogxH1SPeptidoglycan recognition protein 1/0.441
3toh079Gag-Pol polyprotein2.7.7.490.441
3triNAPPyrroline-5-carboxylate reductase/0.441
3w1wCHDFerrochelatase, mitochondrial4.99.1.10.441
4bb3KKAIsopenicillin N synthase1.21.3.10.441
4ktkKTKCytochrome P450/0.441
4nmdFDABifunctional protein PutA/0.441
1hb1OCVIsopenicillin N synthase1.21.3.10.440
1kfbIGPTryptophan synthase alpha chain/0.440
1knuYPAPeroxisome proliferator-activated receptor gamma/0.440
1qorNDPQuinone oxidoreductase 1/0.440
2aa3AP0L-lactate dehydrogenase/0.440
2ahrNAPPyrroline-5-carboxylate reductase/0.440
2ep7NADGlyceraldehyde-3-phosphate dehydrogenase/0.440
2hb3GRLProtease/0.440
2owgSAHDiphthine synthase/0.440
2pr2DG1Enoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.440
2rh9IGPTryptophan synthase alpha chain/0.440
2w3bNDPDihydrofolate reductase1.5.1.30.440
3c0g3AMPeripheral plasma membrane protein CASK2.7.11.10.440
3gobHXXDdmC/0.440
3lpkZ76Beta-secretase 13.4.23.460.440
3u33FADPutative acyl-CoA dehydrogenase AidB1.3.990.440
4b7754MBeta-secretase 13.4.23.460.440
4dfg0JVGag-Pol polyprotein3.4.23.160.440
4fj0NAP17beta-hydroxysteroid dehydrogenase/0.440
4yekTHMThymidine phosphorylase/0.440