2.550 Å
X-ray
2015-02-24
Name: | Thymidine phosphorylase |
---|---|
ID: | TYPH_SALTY |
AC: | Q7CP66 |
Organism: | Salmonella typhimurium |
Reign: | Bacteria |
TaxID: | 99287 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 68.578 |
---|---|
Number of residues: | 20 |
Including | |
Standard Amino Acids: | 19 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.111 | 1039.500 |
% Hydrophobic | % Polar |
---|---|
40.91 | 59.09 |
According to VolSite |
HET Code: | THM |
---|---|
Formula: | C10H14N2O5 |
Molecular weight: | 242.229 g/mol |
DrugBank ID: | DB04485 |
Buried Surface Area: | 48.31 % |
Polar Surface area: | 99.1 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 3 |
Rings: | 2 |
Aromatic rings: | 0 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
217.127 | 52.1008 | 5.66971 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O3' | O | THR- 87 | 3.12 | 165.48 | H-Bond (Ligand Donor) |
C5M | CE1 | TYR- 168 | 4.11 | 0 | Hydrophobic |
O4 | NH2 | ARG- 171 | 3.13 | 141.75 | H-Bond (Protein Donor) |
O4 | NH1 | ARG- 171 | 3.11 | 143.06 | H-Bond (Protein Donor) |
C5M | CG1 | VAL- 177 | 3.34 | 0 | Hydrophobic |
C5M | CG1 | ILE- 183 | 3.77 | 0 | Hydrophobic |
N3 | OG | SER- 186 | 3.04 | 145.82 | H-Bond (Ligand Donor) |
C3' | CD2 | PHE- 210 | 4.3 | 0 | Hydrophobic |
C2' | CE2 | PHE- 210 | 3.74 | 0 | Hydrophobic |
C5M | CZ | PHE- 210 | 3.75 | 0 | Hydrophobic |