Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4asf62UATP-dependent molecular chaperone HSP82

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity
Align
4asf62UATP-dependent molecular chaperone HSP82/1.000
1osfKOSHeat shock protein HSP 90-alpha/0.658
4xdmGDMHeat shock cognate 90 kDa protein/0.646
1yetGDMHeat shock protein HSP 90-alpha/0.629
2exlGDMEndoplasmin/0.603
3pejBC2Endoplasmin homolog, putative/0.584
3c11GDMATP-dependent molecular chaperone HSP82/0.582
4as94QSATP-dependent molecular chaperone HSP82/0.580
2byi2DDHeat shock protein HSP 90-alpha/0.571
4ce17FKATP-dependent molecular chaperone HSP82/0.569
4jqlVJ6Heat shock protein HSP 90-alpha/0.567
2vw5BC6ATP-dependent molecular chaperone HSP82/0.566
2byh2D7Heat shock protein HSP 90-alpha/0.564
3k99PFTHeat shock protein HSP 90-alpha/0.563
3t10ACPHeat shock protein HSP 90-alpha/0.554
2vwcBC2ATP-dependent molecular chaperone HSP82/0.552
3k974CDHeat shock protein HSP 90-alpha/0.552
3vhaVHAHeat shock protein HSP 90-alpha/0.549
4bqjXKLHeat shock protein HSP 90-alpha/0.549
4ce2BO5ATP-dependent molecular chaperone HSP82/0.548
2esaGDMEndoplasmin/0.547
2xabVHDHeat shock protein HSP 90-alpha/0.547
1am1ADPATP-dependent molecular chaperone HSP82/0.546
4egiB2JHeat shock protein HSP 90-alpha/0.543
2qg0A94Heat shock protein HSP 90-alpha/0.542
2xk2ADPHeat shock protein HSP 90-alpha/0.542
4gqtADPHeat shock protein 90/0.539
2iwuNP5ATP-dependent molecular chaperone HSP82/0.538
2breKJ2ATP-dependent molecular chaperone HSP82/0.536
2yegXQGHeat shock protein HSP 90-alpha/0.536
3r4oFU3Heat shock protein HSP 90-alpha/0.535
2xhtC0YHeat shock protein HSP 90-alpha/0.533
4xclAGSHeat shock cognate 90 kDa protein/0.533
1uy7PU4Heat shock protein HSP 90-alpha/0.531
3t2sAGSHeat shock protein HSP 90-alpha/0.530
2yefANPHeat shock protein HSP 90-alpha/0.529
4asg814ATP-dependent molecular chaperone HSP82/0.528
1uyePU9Heat shock protein HSP 90-alpha/0.527
2xcmADPCytosolic heat shock protein 90/0.527
2xd6XD6ATP-dependent molecular chaperone HSP82/0.525
3ekoPYUHeat shock protein HSP 90-alpha/0.524
2yee2ECHeat shock protein HSP 90-alpha/0.523
3hhu819Heat shock protein HSP 90-alpha/0.523
1y4sADPChaperone protein HtpG/0.522
1yc443PHeat shock protein HSP 90-alpha/0.522
2fxsRDAATP-dependent molecular chaperone HSP82/0.522
2werRDCATP-dependent molecular chaperone HSP82/0.522
1yszNECEndoplasmin/0.521
4xcjADPHeat shock cognate 90 kDa protein/0.521
4bqg50QHeat shock protein HSP 90-alpha/0.520
4ipeANPTNF receptor-associated protein 1/0.520
1yc34BCHeat shock protein HSP 90-alpha/0.519
1u0zRDCEndoplasmin/0.518
2wepADPATP-dependent molecular chaperone HSP82/0.518
1uy9PU6Heat shock protein HSP 90-alpha/0.516
2bt0CT5Heat shock protein HSP 90-alpha/0.515
3hz142CHeat shock protein HSP 90-alpha/0.515
3inxJZCHeat shock protein HSP 90-alpha/0.515
1uy8PU5Heat shock protein HSP 90-alpha/0.514
3ekrPY9Heat shock protein HSP 90-alpha/0.514
3hyz42CHeat shock protein HSP 90-alpha/0.514
3k981RCHeat shock protein HSP 90-alpha/0.514
1byqADPHeat shock protein HSP 90-alpha/0.513
4b7p9UNHeat shock protein HSP 90-alpha/0.513
4fcr0TMHeat shock protein HSP 90-alpha/0.513
1u0yPA7Endoplasmin/0.512
2brcCT5ATP-dependent molecular chaperone HSP82/0.512
2ykbYKBHeat shock protein HSP 90-alpha/0.510
2fwyH64Heat shock protein HSP 90-alpha/0.509
2xhrC0PHeat shock protein HSP 90-alpha/0.509
2xjjL81Heat shock protein HSP 90-alpha/0.509
3d0bSNXHeat shock protein HSP 90-alpha/0.509
2qg2A91Heat shock protein HSP 90-alpha/0.508
2gqpPA7Endoplasmin/0.504
3ft8MOJHeat shock protein HSP 90-alpha/0.503
3hz137DHeat shock protein HSP 90-alpha/0.503
3o0iP54Heat shock protein HSP 90-alpha/0.503
3r4nFU5Heat shock protein HSP 90-alpha/0.503
1amwADPATP-dependent molecular chaperone HSP82/0.501
2xx213CATP-dependent molecular chaperone HSP82/0.501
2xjxXJXHeat shock protein HSP 90-alpha/0.500
3t1kANPHeat shock protein HSP 90-alpha/0.500
2ykcYKCHeat shock protein HSP 90-alpha/0.499
3t0zATPHeat shock protein HSP 90-alpha/0.499
2fwzH71Heat shock protein HSP 90-alpha/0.496
1uykPUXHeat shock protein HSP 90-alpha/0.495
2fypRDEEndoplasmin/0.495
3iedAN2HSP90/0.495
2wi6ZZ6Heat shock protein HSP 90-alpha/0.494
2ykjYKJHeat shock protein HSP 90-alpha/0.493
3hz5Z64Heat shock protein HSP 90-alpha/0.492
4egkRDCHeat shock protein HSP 90-alpha/0.492
2yeiXQIHeat shock protein HSP 90-alpha/0.491
2yejZZ3Heat shock protein HSP 90-alpha/0.491
1uydPU8Heat shock protein HSP 90-alpha/0.489
2bz5AB4Heat shock protein HSP 90-alpha/0.489
2iorADPChaperone protein HtpG/0.488
2wi72KLHeat shock protein HSP 90-alpha/0.486
3rlr3RRHeat shock protein HSP 90-alpha/0.486
2yjxYJXHeat shock protein HSP 90-alpha/0.485
4ce3L4VATP-dependent molecular chaperone HSP82/0.485
4nh82LCHeat shock protein HSP 90-alpha/0.485
5f5rANPHeat shock protein 75 kDa, mitochondrial/0.485
1uyiPUZHeat shock protein HSP 90-alpha/0.484
2o1vADPEndoplasmin/0.484
2yejXQKHeat shock protein HSP 90-alpha/0.484
1bgqRDCATP-dependent molecular chaperone HSP82/0.482
1uy6PU3Heat shock protein HSP 90-alpha/0.482
1uymPU3Heat shock protein HSP 90-beta/0.482
2zdyADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial2.7.11.20.482
4efuEFUHeat shock protein HSP 90-alpha/0.482
4hy6FJ1Heat shock protein HSP 90-alpha/0.481
1i59ANPChemotaxis protein CheA2.7.13.30.480
2brgDFYSerine/threonine-protein kinase Chk12.7.11.10.480
3rlq3RQHeat shock protein HSP 90-alpha/0.480
3pehIBDEndoplasmin homolog, putative/0.479
2cgfP2NATP-dependent molecular chaperone HSP82/0.478
4ivgANPTNF receptor-associated protein 1/0.478
3mnrSD1Heat shock protein HSP 90-alpha/0.477
1qy8RDIEndoplasmin/0.476
3crlANP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial2.7.11.20.476
2ykeYKEHeat shock protein HSP 90-alpha/0.475
1uyfPU1Heat shock protein HSP 90-alpha/0.474
2ykiYKIHeat shock protein HSP 90-alpha/0.474
2iwxM1SATP-dependent molecular chaperone HSP82/0.473
3hekBD0Heat shock protein HSP 90-alpha/0.473
1k6tXN1Gag-Pol polyprotein3.4.23.160.471
1xl2189Gag-Pol polyprotein3.4.23.160.471
2yk2YJXHeat shock protein HSP 90-alpha/0.471
1nhhANPDNA mismatch repair protein MutL/0.470
2bu8ADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial2.7.11.20.470
3nwxKVSGag-Pol polyprotein3.4.23.160.470
3o6o94MHeat shock protein 83/0.470
1jm6ADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial2.7.11.20.469
2zkjADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial2.7.11.20.469
1u2oNECEndoplasmin/0.468
2o1uANPEndoplasmin/0.468
3oibFDAPutative acyl-CoA dehydrogenase/0.468
2qfoA13Heat shock protein HSP 90-alpha/0.467
2e0aANP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial2.7.11.20.466
2h55DZ8Heat shock protein HSP 90-alpha/0.466
3d2rADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial2.7.11.20.465
4h4uNDPBiphenyl dioxygenase ferredoxin reductase subunit/0.465
1jioDEB6-deoxyerythronolide B hydroxylase/0.464
4gk2L66Ephrin type-A receptor 32.7.10.10.463
3hrcATP3-phosphoinositide-dependent protein kinase 12.7.11.10.462
3opdHIEHeat shock protein 83/0.462
4xc0ACPHeat shock cognate 90 kDa protein/0.462
2gfdRDAEndoplasmin/0.461
2gr1FADFerredoxin reductase/0.461
3inwJZBHeat shock protein HSP 90-alpha/0.461
4awq592Heat shock protein HSP 90-alpha/0.461
2hchN5AEndoplasmin/0.460
1k6pXN3Gag-Pol polyprotein3.4.23.160.459
1qbgFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.459
5e8wSTUTGF-beta receptor type-12.7.11.300.459
2vx17X8Ephrin type-B receptor 42.7.10.10.458
4bf2STUMitogen-activated protein kinase kinase kinase 52.7.11.250.458
3dgaNDPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.457
3nwq2NCGag-Pol polyprotein3.4.23.160.457
4tuvCPZCytochrome P450 1191.140.457
1kvtUPGUDP-glucose 4-epimerase5.1.3.20.456
2brhDFWSerine/threonine-protein kinase Chk12.7.11.10.456
2qnqQN3Gag-Pol polyprotein3.4.23.160.456
2qfoA51Heat shock protein HSP 90-alpha/0.455
2vci2GJHeat shock protein HSP 90-alpha/0.455
3pgqGY3Acetyl-CoA carboxylase/0.455
3qyw6PBMitogen-activated protein kinase 12.7.11.240.455
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.454
1svmATPLarge T antigen3.6.40.454
2i40BLZCyclin-dependent kinase 22.7.11.220.454
2qhcAB1Protease/0.454
3el4ROCGag-Pol polyprotein3.4.23.160.454
4ezk0SDPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.454
5ar4SB2Receptor-interacting serine/threonine-protein kinase 22.7.11.10.454
1i59ADPChemotaxis protein CheA2.7.13.30.453
1xddAAYIntegrin alpha-L/0.453
2xa4AZ5Tyrosine-protein kinase JAK2/0.453
2yk2YJWHeat shock protein HSP 90-alpha/0.453
3t3c017Gag-Pol polyprotein3.4.23.160.453
4awp99AHeat shock protein HSP 90-alpha/0.453
4l425FIRibosomal protein S6 kinase beta-12.7.11.10.453
1d4aFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.452
1wbk568Pol protein/0.452
2hs2017Protease/0.452
4asjN6AGlucose-1-phosphate thymidylyltransferase/0.452
4cdmFO1Deoxyribodipyrimidine photolyase/0.452
1i58ADPChemotaxis protein CheA2.7.13.30.451
1tvoFRZMitogen-activated protein kinase 12.7.11.240.451
1unlRRCCyclin-dependent-like kinase 52.7.11.10.451
3r8uZ31Cyclin-dependent kinase 22.7.11.220.451
4cdmFADDeoxyribodipyrimidine photolyase/0.451
4gk3L87Ephrin type-A receptor 32.7.10.10.451
2vwy7X5Ephrin type-B receptor 42.7.10.10.450
3zpuM8BGag-Pol polyprotein3.4.23.160.450
4awo99BHeat shock protein HSP 90-alpha/0.450
4riyADPEpidermal growth factor receptor2.7.10.10.450
2wouZZFTGF-beta receptor type-12.7.11.300.449
4an92P7Dual specificity mitogen-activated protein kinase kinase 12.7.12.20.449
4eilCB3Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.449
1h1s4SPCyclin-dependent kinase 22.7.11.220.448
2vwz7X6Ephrin type-B receptor 42.7.10.10.448
4gu610NFocal adhesion kinase 12.7.10.20.448
4l4dCAMCamphor 5-monooxygenase1.14.15.10.448
1qy5NECEndoplasmin/0.447
2pym1UNGag-Pol polyprotein3.4.23.160.447
4c3f7KWTyrosine-protein kinase Lck2.7.10.20.447
4qmxH8HSerine/threonine-protein kinase 242.7.11.10.447
5ackATP3-phosphoinositide-dependent protein kinase 12.7.11.10.447
5c8wPCGcGMP-dependent protein kinase 22.7.11.120.447
2ccu2D9Heat shock protein HSP 90-alpha/0.446
2hg1N5OEndoplasmin/0.446
2vcj2EQHeat shock protein HSP 90-alpha/0.446
2xx413IATP-dependent molecular chaperone HSP82/0.446
2ym44YMSerine/threonine-protein kinase Chk12.7.11.10.446
4a06ATP3-phosphoinositide-dependent protein kinase 12.7.11.10.446
4nh92LCEndoplasmin/0.446
4qq3XMPInosine-5'-monophosphate dehydrogenase/0.446
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.445
1nzfUPGDNA beta-glucosyltransferase/0.445
2brbPFQSerine/threonine-protein kinase Chk12.7.11.10.445
2ijmADPFocal adhesion kinase 12.7.10.20.445
2qak1UNGag-Pol polyprotein3.4.23.160.445
2vx07X7Ephrin type-B receptor 42.7.10.10.445
2wi5ZZ5Heat shock protein HSP 90-alpha/0.445
2y3rTRKTamL/0.445
2zdxP4A[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial2.7.11.20.445
3b28B2XHeat shock protein HSP 90-alpha/0.445
3mvqNDPGlutamate dehydrogenase 1, mitochondrial1.4.1.30.445
3oxxDR7Gag-Pol polyprotein3.4.23.160.445
4anx534Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.445
4egh0OYHeat shock protein HSP 90-alpha/0.445
1dnpFADDeoxyribodipyrimidine photo-lyase4.1.99.30.444
1me8RVPInosine-5'-monophosphate dehydrogenase/0.444
1yt0ADPEndoplasmin/0.444
3cgdCOACoenzyme A disulfide reductase/0.444
4bcqTJFCyclin-dependent kinase 22.7.11.220.444
4bzo676Serine/threonine-protein kinase pim-12.7.11.10.444
4ct1ATP3-phosphoinositide-dependent protein kinase 12.7.11.10.444
4fad0TBPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.444
5eaiFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.444
1i5cADPChemotaxis protein CheA2.7.13.30.443
1kzkJE2Gag-Pol polyprotein3.4.23.160.443
1yw2PGJMitogen-activated protein kinase 14/0.443
2avvMK1Gag-Pol polyprotein3.4.23.160.443
2iwsNP4ATP-dependent molecular chaperone HSP82/0.443
2oz6CMPCyclic AMP receptor-like protein/0.443
3el1DR7Gag-Pol polyprotein3.4.23.160.443
3r71X86Cyclin-dependent kinase 22.7.11.220.443
3r7yZ04Cyclin-dependent kinase 22.7.11.220.443
1c70L75Protease/0.442
1k6vXN2Gag-Pol polyprotein3.4.23.160.442
1s4dSAHUroporphyrinogen-III C-methyltransferase2.1.1.1070.442
2d1yNADOxidoreductase, short-chain dehydrogenase/reductase family/0.442
2zbaZBATrichothecene 3-O-acetyltransferase/0.442
3livE16Protease/0.442
3lxiCAMCytochrome P450/0.442
3nd1SAHPrecorrin-6A synthase (Deacetylating)/0.442
3q5kD1UHeat shock protein 83-1/0.442
4b99R4LMitogen-activated protein kinase 72.7.11.240.442
1sguMK1Gag-Pol polyprotein3.4.23.160.441
1uycPU7Heat shock protein HSP 90-alpha/0.441
1yc14BCHeat shock protein HSP 90-alpha/0.441
2acxANPG protein-coupled receptor kinase 62.7.11.160.441
2j0k4STFocal adhesion kinase 12.7.10.20.441
2zb45OPProstaglandin reductase 21.3.1.480.441
3aidARQGag-Pol polyprotein3.4.23.160.441
3ekx1UNGag-Pol polyprotein3.4.23.160.441
3tu5ATPActin, alpha skeletal muscle/0.441
4hjfC2EGGDEF family protein/0.441
4m87NADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.441
4u9aSTUInterleukin-1 receptor-associated kinase 42.7.11.10.441
1hosPHPGag-Pol polyprotein/0.440
1hsgMK1Gag-Pol polyprotein/0.440
1kvsUPGUDP-glucose 4-epimerase5.1.3.20.440
2brmDFZSerine/threonine-protein kinase Chk12.7.11.10.440
2c6mDT5Cyclin-dependent kinase 22.7.11.220.440
2etm7PYFocal adhesion kinase 12.7.10.20.440
2pwlACPFibroblast growth factor receptor 2/0.440
2ye42FYHeat shock protein HSP 90-alpha/0.440
2zuiCAMCamphor 5-monooxygenase1.14.15.10.440
3fhxPLPPyridoxal kinase2.7.1.350.440
3gi3B10Mitogen-activated protein kinase 14/0.440
3rukAERSteroid 17-alpha-hydroxylase/17,20 lyase/0.440
4a6cQG9Gag-Pol polyprotein3.4.23.160.440
4ftr5HKSerine/threonine-protein kinase Chk12.7.11.10.440
4ia1BIVVitamin D3 receptor A/0.440
5cp4CAMCamphor 5-monooxygenase1.14.15.10.440
5ifyUMPGlucose-1-phosphate thymidylyltransferase/0.440