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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1njsKEUTrifunctional purine biosynthetic protein adenosine-32.1.2.2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
1njsKEUTrifunctional purine biosynthetic protein adenosine-32.1.2.21.000
1rbqKEUTrifunctional purine biosynthetic protein adenosine-32.1.2.20.651
1rbmKT5Trifunctional purine biosynthetic protein adenosine-32.1.2.20.633
1rc0KT5Trifunctional purine biosynthetic protein adenosine-32.1.2.20.626
1rbzKT5Trifunctional purine biosynthetic protein adenosine-32.1.2.20.619
1c3eNHRPhosphoribosylglycinamide formyltransferase/0.559
1c2tNHSPhosphoribosylglycinamide formyltransferase/0.556
4xldBRLPeroxisome proliferator-activated receptor gamma/0.513
2f7x4EAcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.508
1cdeDZFPhosphoribosylglycinamide formyltransferase/0.505
1cdeGARPhosphoribosylglycinamide formyltransferase/0.502
2vo7M05cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.492
1rbyGARTrifunctional purine biosynthetic protein adenosine-32.1.2.20.490
1xl5190Gag-Pol polyprotein3.4.23.160.489
5c77SAHProtein arginine N-methyltransferase SFM1/0.484
1jkx138Phosphoribosylglycinamide formyltransferase/0.483
2q61SF1Peroxisome proliferator-activated receptor gamma/0.483
1fm9570Peroxisome proliferator-activated receptor gamma/0.482
2npaMMBPeroxisome proliferator-activated receptor alpha/0.482
2ooyATP5'-AMP-activated protein kinase subunit gamma/0.479
4jk3NADUncharacterized protein/0.478
3i59N6RCRP-like cAMP-activated global transcriptional regulator/0.477
4a4qUX9Pol protein/0.477
4l435FIRibosomal protein S6 kinase beta-12.7.11.10.477
2owkSAHDiphthine synthase/0.476
2p6kSAHDiphthine synthase/0.475
3t2zFADSulfide-quinone reductase/0.475
2uztSS3cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.474
1fm6BRLPeroxisome proliferator-activated receptor gamma/0.473
2el3SAHDiphthine synthase/0.473
2gtk208Peroxisome proliferator-activated receptor gamma/0.472
2hwrDRDPeroxisome proliferator-activated receptor gamma/0.471
4bb5HD2Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.471
1m0b0ZQGag-Pol polyprotein3.4.23.160.470
1menGARTrifunctional purine biosynthetic protein adenosine-32.1.2.20.470
2wyvNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.470
2z54AB1Gag-Pol polyprotein3.4.23.160.470
3bc3OPTCathepsin L13.4.22.150.470
1bygSTUTyrosine-protein kinase CSK/0.469
4h3qANPMitogen-activated protein kinase 12.7.11.240.469
1hbvGANGag-Pol polyprotein/0.468
1wngSAHDiphthine synthase/0.468
2ed5SAHDiphthine synthase/0.468
2hfpNSIPeroxisome proliferator-activated receptor gamma/0.467
3iobA4DPantothenate synthetase6.3.2.10.467
2ath3EAPeroxisome proliferator-activated receptor gamma/0.466
2c1bCQPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.466
2p5cSAHDiphthine synthase/0.466
2p5fSAHDiphthine synthase/0.466
3lzs017Gag-Pol polyprotein3.4.23.160.466
4hgs15GCasein kinase I isoform gamma-32.7.11.10.466
4m87NADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.466
2e8rSAHDiphthine synthase/0.465
2eeqSAHDiphthine synthase/0.465
2g5cNADPrephenate dehydrogenase/0.465
2pobGW4Peroxisome proliferator-activated receptor gamma/0.465
2uzwSS4cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.465
3e5rNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.465
2dsiSAHDiphthine synthase/0.464
2f4bEHAPeroxisome proliferator-activated receptor gamma/0.464
2dv4SAHDiphthine synthase/0.463
2uzuL20cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.463
3lshFADPyranose 2-oxidase/0.463
3e8cG96cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.461
3tkh07SSerine/threonine-protein kinase Chk12.7.11.10.461
4mk029XBeta-adrenergic receptor kinase 12.7.11.150.461
1hsgMK1Gag-Pol polyprotein/0.460
1i7iAZ2Peroxisome proliferator-activated receptor gamma/0.460
2ehlSAHDiphthine synthase/0.460
2ek4SAHDiphthine synthase/0.460
2huqSAHDiphthine synthase/0.460
2jdtI5ScAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.460
2q5p241Peroxisome proliferator-activated receptor gamma/0.460
3cifNADGlyceraldehyde-3-phosphate dehydrogenase/0.460
3pvzNADUDP-N-acetylglucosamine 4,6-dehydratase/0.460
3vob9PCCell division protein FtsZ/0.460
4ew3DXZTrifunctional purine biosynthetic protein adenosine-32.1.2.20.460
4ipw1G7Mycocyclosin synthase1.14.21.90.460
2f7z6EAcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.459
2oh02PYcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.459
2owuSAHDiphthine synthase/0.459
3qp0NI8Gag-Pol polyprotein3.4.23.160.459
4i8zG08Gag-Pol polyprotein3.4.23.160.459
4yfy1YJVioF/0.459
2eleSAHDiphthine synthase/0.458
2x7hPFNProstaglandin reductase 310.458
3v9v21LPeroxisome proliferator-activated receptor gamma/0.458
4fsrHKCSerine/threonine-protein kinase Chk12.7.11.10.458
4q73FADBifunctional protein PutA/0.458
1ndiCOACarnitine O-acetyltransferase2.3.1.70.457
2bd0NAPSepiapterin reductase/0.457
2fxeDR7Gag-Pol polyprotein3.4.23.160.457
2gjlFMNNitronate monooxygenase1.13.12.160.457
2vynNADGlyceraldehyde-3-phosphate dehydrogenase A/0.457
3h6vNS6Glutamate receptor 2/0.457
3hx4ANPCalmodulin-domain protein kinase 1/0.457
3jskAHZThiamine thiazole synthase/0.457
4kb9G79Protease/0.457
1k6pXN3Gag-Pol polyprotein3.4.23.160.456
2dteNAIGlucose 1-dehydrogenase related protein/0.456
2nu9COASuccinate--CoA ligase [ADP-forming] subunit alpha6.2.1.50.456
2uw5GVNcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.456
3aidARQGag-Pol polyprotein3.4.23.160.456
4ewn0VRImidazole glycerol phosphate synthase subunit HisF4.1.30.456
4i2q1BTGag-Pol polyprotein2.7.7.490.456
4ma628EAra h 8 allergen/0.456
2b60RITPol polyprotein/0.455
2eh2SAHDiphthine synthase/0.455
2hutSAHDiphthine synthase/0.455
2ojf4PYcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.455
3sp6IL2Peroxisome proliferator-activated receptor alpha/0.455
4nakPBQ2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic2.7.7.600.455
1vceSAHDiphthine synthase/0.454
2q641UNGag-Pol polyprotein3.4.23.160.454
2znnS44Peroxisome proliferator-activated receptor alpha/0.454
3dl9BCDVitamin D 25-hydroxylase/0.454
3v9y24LPeroxisome proliferator-activated receptor gamma/0.454
4g7gVFVLanosterol 14-alpha-demethylase/0.454
4y93746Tyrosine-protein kinase/0.454
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.453
1jld0PPGag-Pol polyprotein/0.453
1nm1ATPMajor actin/0.453
1xddAAYIntegrin alpha-L/0.453
2dsgSAHDiphthine synthase/0.453
2pb4SAHDiphthine synthase/0.453
2pb6SAHDiphthine synthase/0.453
2qak1UNGag-Pol polyprotein3.4.23.160.453
2woeAR6ADP-ribosyl-[dinitrogen reductase] glycohydrolase3.2.2.240.453
3em3478Gag-Pol polyprotein3.4.23.160.453
3opdHIEHeat shock protein 83/0.453
1w2xRCPAcetyl-CoA carboxylase/0.452
2e4nSAHDiphthine synthase/0.452
2ejkSAHDiphthine synthase/0.452
2f81017Gag-Pol polyprotein3.4.23.160.452
2huvSAHDiphthine synthase/0.452
2q5g1FAPeroxisome proliferator-activated receptor delta/0.452
2vtoLZ8Cyclin-dependent kinase 22.7.11.220.452
2zgzGNPPlasmid segregation protein ParM/0.452
3nu5478Gag-Pol polyprotein3.4.23.160.452
3syiFADSulfide-quinone reductase/0.452
3wmxNADNAD dependent epimerase/dehydratase/0.452
4dsgFADUncharacterized protein/0.452
4f9mFCMPeroxisome proliferator-activated receptor gamma/0.452
4fmqANPMitogen-activated protein kinase 12.7.11.240.452
4iqlFMNEnoyl-(Acyl-carrier-protein) reductase II/0.452
4uckSAMLarge structural protein/0.452
4y8wSTRSteroid 21-hydroxylase/0.452
4y95746Tyrosine-protein kinase/0.452
1fej2NCGag-Pol polyprotein3.4.23.160.451
1sbgIM1Gag-Pol polyprotein/0.451
2fdd385Pol protein/0.451
2gnhH52cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.451
2gu8796cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.451
2uxhQUEHTH-type transcriptional regulator TtgR/0.451
3w8eNAD3-hydroxybutyrate dehydrogenase/0.451
1oriSAHProtein arginine N-methyltransferase 1/0.450
1snyNAPLD36273p/0.450
1u1iNADMyo-inositol-1-phosphate synthase (Ino1)/0.450
2f3kRO1Protease/0.450
2hs2017Protease/0.450
3em6017Gag-Pol polyprotein3.4.23.160.450
3i5zZ48Mitogen-activated protein kinase 12.7.11.240.450
3ijoB4DGlutamate receptor 2/0.450
3toxNAPPutative oxidoreductase/0.450
4xgxADPFAD:protein FMN transferase/0.450
5br4NADLactaldehyde reductase1.1.1.770.450
1ec3MS3Gag-Pol polyprotein3.4.23.160.449
1ipeNDPTropinone reductase 21.1.1.2360.449
2cciATPCyclin-dependent kinase 22.7.11.220.449
2gd2CAAProbable alpha-methylacyl-CoA racemase Mcr (2-methylacyl-CoA racemase) (2-arylpropionyl-CoA epimerase )/0.449
3dejRXCCaspase-33.4.22.560.449
3mx2TTPNucleoprotein/0.449
3umvFADDeoxyribodipyrimidine photo-lyase4.1.99.30.449
4fsnA58Serine/threonine-protein kinase Chk12.7.11.10.449
4oh4ANPProtein BRASSINOSTEROID INSENSITIVE 12.7.10.10.449
4p53NAI2-epi-5-epi-valiolone synthase/0.449
4q71FADBifunctional protein PutA/0.449
4tuvCPZCytochrome P450 1191.140.449
1c3eGARPhosphoribosylglycinamide formyltransferase/0.448
1g6kNADGlucose 1-dehydrogenase1.1.1.470.448
1xe55FEPlasmepsin-23.4.23.390.448
2c6o4SPCyclin-dependent kinase 22.7.11.220.448
2ic3HBYGag-Pol polyprotein2.7.7.490.448
2vnkFADNADPH:ferredoxin reductase/0.448
3ch6311Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.448
3etgNDPGlutamate dehydrogenase 1, mitochondrial1.4.1.30.448
3f63GTXGlutathione transferase GST1-4/0.448
3kjrNAPBifunctional dihydrofolate reductase-thymidylate synthase/0.448
3v5l0G1Tyrosine-protein kinase ITK/TSK2.7.10.20.448
3vqsJT1Genome polyprotein/0.448
3zuyTCHTransporter/0.448
4bf2STUMitogen-activated protein kinase kinase kinase 52.7.11.250.448
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.448
4cqlNADEstradiol 17-beta-dehydrogenase 81.1.1.620.448
4jbqVX6Aurora kinase A2.7.11.10.448
4oj4DIFPeroxisome proliferator-activated receptor gamma/0.448
4oxyNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.448
4u8iFDAUDP-galactopyranose mutase/0.448
1aj8COACitrate synthase/0.447
1gqtACPRibokinase/0.447
1jioDEB6-deoxyerythronolide B hydroxylase/0.447
1qlhNADAlcohol dehydrogenase E chain1.1.1.10.447
1vijBAYGag-Pol polyprotein/0.447
2egsSAHDiphthine synthase/0.447
3deiRXBCaspase-33.4.22.560.447
3etdNDPGlutamate dehydrogenase 1, mitochondrial1.4.1.30.447
3gcnTYR_GLN_PHESerine endoprotease DegS3.4.21.1070.447
3lzu017Gag-Pol polyprotein3.4.23.160.447
3pqbVGPPutative oxidoreductase/0.447
4aicNDP1-deoxy-D-xylulose 5-phosphate reductoisomerase/0.447
4ftt6HKSerine/threonine-protein kinase Chk12.7.11.10.447
4q72FADBifunctional protein PutA/0.447
4wucANPDNA gyrase subunit B/0.447
1vikBAYGag-Pol polyprotein/0.446
2x3nFADProbable FAD-dependent monooxygenase/0.446
3invNDPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.446
3kddJZQGag-Pol polyprotein3.4.23.160.446
3nu3478Gag-Pol polyprotein3.4.23.160.446
3u9eCOALmo1369 protein/0.446
3vdqNAD3-hydroxybutyrate dehydrogenase/0.446
4fx360KCyclin-dependent kinase 22.7.11.220.446
4r21STRCytochrome P450 family 17 polypeptide 2/0.446
4u2lSFDCholesterol oxidase1.1.3.60.446
4xuhSFIPeroxisome proliferator-activated receptor gamma/0.446
4y9qC2EUncharacterized protein/0.446
1dssNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.445
1ebwBEIGag-Pol polyprotein3.4.23.160.445
1w5yBE6Gag-Pol polyprotein3.4.23.160.445
2e8sSAHDiphthine synthase/0.445
2el0SAHDiphthine synthase/0.445
2h8hH8HProto-oncogene tyrosine-protein kinase Src2.7.10.20.445
2huxSAHDiphthine synthase/0.445
2nuaCOASuccinate--CoA ligase [ADP-forming] subunit alpha6.2.1.50.445
2p3b3TLV-1 PROTEASE protein/0.445
2p3b3TLV-1 protease/0.445
2pwcG3GGag-Pol polyprotein3.4.23.160.445
3cylVITBasic phospholipase A2 homolog piratoxin-2/0.445
3ogqAB1Pol polyprotein/0.445
3oqfS51Renin3.4.23.150.445
3r3sNADPutative oxidoreductase/0.445
4ips1G4Mycocyclosin synthase1.14.21.90.445
4xumIMNPeroxisome proliferator-activated receptor gamma/0.445
5ks72BACarnitine transport ATP-binding protein OpuCA3.6.3.320.445
1k74544Peroxisome proliferator-activated receptor gamma/0.444
1sdvMK1Gag-Pol polyprotein3.4.23.160.444
1unlRRCCyclin-dependent-like kinase 52.7.11.10.444
1wvgAPRCDP-glucose 4,6-dehydratase4.2.1.450.444
2bqvA1AProtease/0.444
2e8hSAHDiphthine synthase/0.444
2q5kAB1Protease/0.444
2uxpCLMHTH-type transcriptional regulator TtgR/0.444
2ym2FADPhenylacetone monooxygenase1.14.13.920.444
3ggaGGWGag-Pol polyprotein/0.444
3gobHXXDdmC/0.444
3pwm017Gag-Pol polyprotein3.4.23.160.444
3t2yFADSulfide-quinone reductase/0.444
4a6bQG8Gag-Pol polyprotein3.4.23.160.444
4ji91M3Tyrosine-protein kinase JAK2/0.444
4z24FADPutative GMC-type oxidoreductase R13510.444
5jlaNADPutative short-chain dehydrogenase/reductase/0.444
1ec0BEDGag-Pol polyprotein3.4.23.160.443
1idb0DOGag-Pol polyprotein/0.443
2dxvSAHDiphthine synthase/0.443
2dxwSAHDiphthine synthase/0.443
2fzwNADAlcohol dehydrogenase class-31.1.1.10.443
2pziAXXSerine/threonine-protein kinase PknG2.7.11.10.443
2wkz5AHGag-Pol polyprotein/0.443
2y5kYCUFructose-1,6-bisphosphatase 13.1.3.110.443
2ylzFADPhenylacetone monooxygenase1.14.13.920.443
3py0SU9Cyclin-dependent kinase 22.7.11.220.443
3r4b74TGag-Pol polyprotein/0.443
3rk507ZCyclin-dependent kinase 22.7.11.220.443
3rmwUPGGlycogenin-12.4.1.1860.443
3t1tGDPProbable gliding protein mglA/0.443
3uxyNADShort-chain dehydrogenase/reductase SDR/0.443
4jx1CAHCamphor 5-monooxygenase1.14.15.10.443
4p8rNADGlyceraldehyde-3-phosphate dehydrogenase/0.443
3sn6P0GBeta-2 adrenergic receptor/0.443
1a8g2Z4Gag-Pol polyprotein3.4.23.160.442
1ebzBECGag-Pol polyprotein3.4.23.160.442
1fvv107Cyclin-dependent kinase 22.7.11.220.442
2cig1DGDihydrofolate reductase1.5.1.30.442
2y05NAPProstaglandin reductase 1/0.442
3ggxGGXGag-Pol polyprotein/0.442
3iaeD7KBenzaldehyde lyase/0.442
3kpkFADSulfide-quinone reductase/0.442
3r2b05BMAP kinase-activated protein kinase 22.7.11.10.442
3r7vZ02Cyclin-dependent kinase 22.7.11.220.442
3uayADNPurine nucleoside phosphorylase DeoD-type/0.442
4kd11QKCyclin-dependent kinase 22.7.11.220.442
4njt017Protease/0.442
5dhhDGWNociceptin receptor/0.442
1fm4DXCMajor pollen allergen Bet v 1-L/0.441
1mrwK57Gag-Pol polyprotein3.4.23.160.441
2eldSAHDiphthine synthase/0.441
2f7e2EAcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.441
2hxq373Serine/threonine-protein kinase Chk12.7.11.10.441
2idw017Protease/0.441
2jdsL20cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.441
2npnSAMPutative cobalamin synthesis related protein/0.441
2owgSAHDiphthine synthase/0.441
2rkfAB1Pol protein/0.441
3bgcLJHGag-Pol polyprotein3.4.23.160.441
3bxzADPProtein translocase subunit SecA/0.441
3own3OWRenin3.4.23.150.441
3oxcROCProtease/0.441
3sa323XProtease/0.441
4b7xNAPProbable oxidoreductase/0.441
4bvaT3Ketimine reductase mu-crystallin1.5.1.250.441
4e4n0NLTyrosine-protein kinase JAK1/0.441
4i6aHMG3-hydroxy-3-methylglutaryl-coenzyme A reductase1.1.1.880.441
4qofFMNRibosyldihydronicotinamide dehydrogenase [quinone]/0.441
4zohFADPutative oxidoreductase FAD-binding subunit/0.441
1cboFADCholesterol oxidase1.1.3.60.440
1dhrNADDihydropteridine reductase1.5.1.340.440
1dq9HMG3-hydroxy-3-methylglutaryl-coenzyme A reductase1.1.1.340.440
1ha3MAUElongation factor Tu-A/0.440
1hshMK1Gag-Pol polyprotein/0.440
1i3mUD1UDP-glucose 4-epimerase/0.440
1lbcCYZGlutamate receptor 2/0.440
1npvL27Gag-Pol polyprotein3.4.23.160.440
1rl8RITGag-Pol polyprotein3.4.23.160.440
1scuCOASuccinate--CoA ligase [ADP-forming] subunit alpha6.2.1.50.440
1uumAFIDihydroorotate dehydrogenase (quinone), mitochondrial1.3.5.20.440
2e17SAHDiphthine synthase/0.440
2jcxNDP1-deoxy-D-xylulose 5-phosphate reductoisomerase/0.440
2jd0NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase/0.440
2nruT12Interleukin-1 receptor-associated kinase 42.7.11.10.440
2ou2ACOHistone acetyltransferase KAT5/0.440
2q8sL92Peroxisome proliferator-activated receptor gamma/0.440
2w06FRVCyclin-dependent kinase 22.7.11.220.440
2z6rSAHDiphthine synthase/0.440
3el4ROCGag-Pol polyprotein3.4.23.160.440
3hdhNADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.440
3rm618ZCyclin-dependent kinase 22.7.11.220.440
3t14FADSulfide-quinone reductase/0.440
3v04V04Dual specificity mitogen-activated protein kinase kinase 12.7.12.20.440
4bdhWVISerine/threonine-protein kinase Chk22.7.11.10.440
4dfg0JVGag-Pol polyprotein3.4.23.160.440
4ftcH6KSerine/threonine-protein kinase Chk12.7.11.10.440
4i6f1C7Serine/threonine-protein kinase PLK22.7.11.210.440
4k2xFADPolyketide oxygenase/hydroxylase/0.440
4qedNAPElxO/0.440
4trnNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.440