1.950 Å
X-ray
2011-03-23
Name: | Cyclin-dependent kinase 2 |
---|---|
ID: | CDK2_HUMAN |
AC: | P24941 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.7.11.22 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 27.831 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 28 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.154 | 904.500 |
% Hydrophobic | % Polar |
---|---|
44.78 | 55.22 |
According to VolSite |
HET Code: | Z02 |
---|---|
Formula: | C13H12N4O3 |
Molecular weight: | 272.259 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 49.72 % |
Polar Surface area: | 113.82 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 2 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 1 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
-91.3139 | -46.3539 | -82.7105 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C06 | CD1 | ILE- 10 | 4.46 | 0 | Hydrophobic |
C08 | CG2 | ILE- 10 | 3.32 | 0 | Hydrophobic |
C17 | CG2 | ILE- 10 | 3.65 | 0 | Hydrophobic |
C05 | CG1 | VAL- 18 | 4.13 | 0 | Hydrophobic |
C05 | CB | ALA- 31 | 3.99 | 0 | Hydrophobic |
O19 | NZ | LYS- 33 | 3.88 | 0 | Ionic (Protein Cationic) |
N02 | O | GLU- 81 | 3.13 | 172.38 | H-Bond (Ligand Donor) |
N03 | O | LEU- 83 | 2.89 | 133.81 | H-Bond (Ligand Donor) |
O18 | N | LEU- 83 | 2.96 | 175.07 | H-Bond (Protein Donor) |
C08 | CD2 | LEU- 134 | 4.34 | 0 | Hydrophobic |
C12 | CD2 | LEU- 134 | 3.98 | 0 | Hydrophobic |
C06 | CD1 | LEU- 134 | 3.59 | 0 | Hydrophobic |
N04 | O | HOH- 352 | 2.68 | 179.97 | H-Bond (Protein Donor) |