2.500 Å
X-ray
1992-05-15
Name: | Phosphoribosylglycinamide formyltransferase |
---|---|
ID: | PUR3_ECOLI |
AC: | P08179 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 83333 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
C | 100 % |
B-Factor: | 16.979 |
---|---|
Number of residues: | 30 |
Including | |
Standard Amino Acids: | 29 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.959 | 813.375 |
% Hydrophobic | % Polar |
---|---|
45.23 | 54.77 |
According to VolSite |
HET Code: | GAR |
---|---|
Formula: | C7H14N2O8P |
Molecular weight: | 285.168 g/mol |
DrugBank ID: | DB02236 |
Buried Surface Area: | 58.65 % |
Polar Surface area: | 188.65 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 4 |
Rings: | 1 |
Aromatic rings: | 0 |
Anionic atoms: | 2 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
78.9326 | 12.0184 | 40.2622 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O18 | N | GLY- 11 | 3.08 | 153.78 | H-Bond (Protein Donor) |
O17 | OG | SER- 12 | 2.63 | 157.36 | H-Bond (Protein Donor) |
O17 | N | SER- 12 | 3.01 | 149.5 | H-Bond (Protein Donor) |
O16 | ND2 | ASN- 13 | 3.37 | 150.71 | H-Bond (Protein Donor) |
O16 | N | ASN- 13 | 3.1 | 165.06 | H-Bond (Protein Donor) |
C2 | CG2 | ILE- 107 | 4.1 | 0 | Hydrophobic |
C2 | CG | PRO- 109 | 4.42 | 0 | Hydrophobic |
O6 | NE2 | GLN- 170 | 2.85 | 175.08 | H-Bond (Protein Donor) |
O6 | OE1 | GLU- 173 | 2.55 | 159.86 | H-Bond (Ligand Donor) |
O8 | OE2 | GLU- 173 | 2.54 | 140.77 | H-Bond (Ligand Donor) |
O8 | OE1 | GLU- 173 | 3.38 | 156.67 | H-Bond (Ligand Donor) |