1.600 Å
X-ray
2011-04-20
Name: | Cyclin-dependent kinase 2 |
---|---|
ID: | CDK2_HUMAN |
AC: | P24941 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.7.11.22 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 27.893 |
---|---|
Number of residues: | 37 |
Including | |
Standard Amino Acids: | 34 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 3 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.906 | 729.000 |
% Hydrophobic | % Polar |
---|---|
43.98 | 56.02 |
According to VolSite |
HET Code: | 18Z |
---|---|
Formula: | C18H26N9O3 |
Molecular weight: | 416.458 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 58.59 % |
Polar Surface area: | 184.61 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 9 |
H-Bond Donors: | 5 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 1 |
Cationic atoms: | 2 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 9 |
X | Y | Z |
---|---|---|
93.6347 | 44.8445 | -83.1673 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C18 | CG2 | ILE- 10 | 4.3 | 0 | Hydrophobic |
C22 | CG2 | ILE- 10 | 4.44 | 0 | Hydrophobic |
C12 | CD1 | ILE- 10 | 4.18 | 0 | Hydrophobic |
C13 | CG2 | ILE- 10 | 3.71 | 0 | Hydrophobic |
C10 | CG1 | VAL- 18 | 4.35 | 0 | Hydrophobic |
C14 | CG1 | VAL- 18 | 4.23 | 0 | Hydrophobic |
C10 | CB | ALA- 31 | 3.69 | 0 | Hydrophobic |
N01 | O | GLU- 81 | 2.92 | 162.19 | H-Bond (Ligand Donor) |
N03 | O | LEU- 83 | 3.11 | 130.49 | H-Bond (Ligand Donor) |
O28 | N | LEU- 83 | 2.97 | 172.35 | H-Bond (Protein Donor) |
C17 | CD2 | LEU- 134 | 3.92 | 0 | Hydrophobic |
C11 | CD1 | LEU- 134 | 3.65 | 0 | Hydrophobic |