2.100 Å
X-ray
2003-11-03
Name: | Trifunctional purine biosynthetic protein adenosine-3 |
---|---|
ID: | PUR2_HUMAN |
AC: | P22102 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.1.2.2 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 24.139 |
---|---|
Number of residues: | 32 |
Including | |
Standard Amino Acids: | 29 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.894 | 607.500 |
% Hydrophobic | % Polar |
---|---|
49.44 | 50.56 |
According to VolSite |
HET Code: | GAR |
---|---|
Formula: | C7H14N2O8P |
Molecular weight: | 285.168 g/mol |
DrugBank ID: | DB02236 |
Buried Surface Area: | 70.84 % |
Polar Surface area: | 188.65 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 4 |
Rings: | 1 |
Aromatic rings: | 0 |
Anionic atoms: | 2 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
-21.313 | 67.6466 | -4.61917 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O18 | N | GLY- 11 | 2.67 | 160.03 | H-Bond (Protein Donor) |
O17 | N | SER- 12 | 2.8 | 144.69 | H-Bond (Protein Donor) |
O17 | OG | SER- 12 | 2.52 | 153.41 | H-Bond (Protein Donor) |
O16 | N | ASN- 13 | 2.89 | 160.69 | H-Bond (Protein Donor) |
O16 | ND2 | ASN- 13 | 3.02 | 147.78 | H-Bond (Protein Donor) |
N24 | O | PHE- 88 | 2.93 | 138.82 | H-Bond (Ligand Donor) |
C2 | CG2 | ILE- 107 | 4.19 | 0 | Hydrophobic |
N19 | O | ILE- 107 | 2.75 | 140.58 | H-Bond (Ligand Donor) |
C2 | CG | PRO- 109 | 4.28 | 0 | Hydrophobic |
O17 | NZ | LYS- 170 | 2.9 | 175.63 | H-Bond (Protein Donor) |
O17 | NZ | LYS- 170 | 2.9 | 0 | Ionic (Protein Cationic) |
O6 | OE1 | GLU- 173 | 2.67 | 144.82 | H-Bond (Ligand Donor) |
O8 | OE1 | GLU- 173 | 3.42 | 135.41 | H-Bond (Ligand Donor) |
O18 | O | HOH- 532 | 2.55 | 149.44 | H-Bond (Protein Donor) |
O16 | O | HOH- 574 | 2.55 | 179.96 | H-Bond (Protein Donor) |