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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Protein Data Bank Entry:

2uxp

2.700 Å

X-ray

2007-03-29

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:HTH-type transcriptional regulator TtgR
ID:TTGR_PSEPT
AC:Q9AIU0
Organism:Pseudomonas putida
Reign:Bacteria
TaxID:1196325
EC Number:/


Chains:

Chain Name:Percentage of Residues
within binding site
B100 %


Ligand binding site composition:

B-Factor:65.666
Number of residues:28
Including
Standard Amino Acids: 28
Non Standard Amino Acids: 0
Water Molecules: 0
Cofactors:
Metals:

Cavity properties

LigandabilityVolume (Å3)
1.3341198.125

% Hydrophobic% Polar
52.9647.04
According to VolSite

Ligand :
2uxp_2 Structure
HET Code: CLM
Formula: C11H11Cl2N2O5
Molecular weight: 322.121 g/mol
DrugBank ID: DB00446
Buried Surface Area:54.71 %
Polar Surface area: 123.99 Å2
Number of
H-Bond Acceptors: 5
H-Bond Donors: 3
Rings: 1
Aromatic rings: 1
Anionic atoms: 2
Cationic atoms: 1
Rule of Five Violation: 0
Rotatable Bonds: 6

Mass center Coordinates

XYZ
-1.4253536.72913.8487


Binding mode :
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Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
CL2CBHIS- 674.210Hydrophobic
O9AOE2GLU- 782.95159.68H-Bond
(Ligand Donor)
C10CEMET- 893.770Hydrophobic
C11CD2LEU- 924.080Hydrophobic
C5CD2LEU- 934.090Hydrophobic
C11CD2LEU- 934.310Hydrophobic
C4CG1VAL- 963.650Hydrophobic
CL1SGCYS- 1373.390Hydrophobic
C7SGCYS- 1373.240Hydrophobic
C6CD1ILE- 1414.080Hydrophobic
C10CG1ILE- 1413.670Hydrophobic
C4CG1VAL- 1713.580Hydrophobic