2.700 Å
X-ray
2007-03-29
Name: | HTH-type transcriptional regulator TtgR |
---|---|
ID: | TTGR_PSEPT |
AC: | Q9AIU0 |
Organism: | Pseudomonas putida |
Reign: | Bacteria |
TaxID: | 1196325 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 65.666 |
---|---|
Number of residues: | 28 |
Including | |
Standard Amino Acids: | 28 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.334 | 1198.125 |
% Hydrophobic | % Polar |
---|---|
52.96 | 47.04 |
According to VolSite |
HET Code: | CLM |
---|---|
Formula: | C11H11Cl2N2O5 |
Molecular weight: | 322.121 g/mol |
DrugBank ID: | DB00446 |
Buried Surface Area: | 54.71 % |
Polar Surface area: | 123.99 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 3 |
Rings: | 1 |
Aromatic rings: | 1 |
Anionic atoms: | 2 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-1.42535 | 36.729 | 13.8487 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CL2 | CB | HIS- 67 | 4.21 | 0 | Hydrophobic |
O9A | OE2 | GLU- 78 | 2.95 | 159.68 | H-Bond (Ligand Donor) |
C10 | CE | MET- 89 | 3.77 | 0 | Hydrophobic |
C11 | CD2 | LEU- 92 | 4.08 | 0 | Hydrophobic |
C5 | CD2 | LEU- 93 | 4.09 | 0 | Hydrophobic |
C11 | CD2 | LEU- 93 | 4.31 | 0 | Hydrophobic |
C4 | CG1 | VAL- 96 | 3.65 | 0 | Hydrophobic |
CL1 | SG | CYS- 137 | 3.39 | 0 | Hydrophobic |
C7 | SG | CYS- 137 | 3.24 | 0 | Hydrophobic |
C6 | CD1 | ILE- 141 | 4.08 | 0 | Hydrophobic |
C10 | CG1 | ILE- 141 | 3.67 | 0 | Hydrophobic |
C4 | CG1 | VAL- 171 | 3.58 | 0 | Hydrophobic |