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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4n5nNAPAcetoacetyl-CoA reductase1.1.1.36

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
4n5nNAPAcetoacetyl-CoA reductase1.1.1.361.000
3sj7NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative/0.565
4k6fNAPPutative Acetoacetyl-CoA reductase/0.562
4dbzNDPPutative ketoacyl reductase1.3.10.557
4nbtNAD3-oxoacyl-[acyl-carrier-protein] reductase/0.557
4dc0NDPPutative ketoacyl reductase1.3.10.555
4nbwNADShort-chain dehydrogenase/reductase SDR/0.554
2fr0NDP6-deoxyerythronolide-B synthase EryA1, modules 1 and 2/0.549
4qecNAPElxO/0.549
2ztvNADD(-)-3-hydroxybutyrate dehydrogenase/0.545
4fw8NAI3-oxoacyl-(Acyl-carrier-protein) reductase/0.544
4hp8NAP2-deoxy-D-gluconate 3-dehydrogenase/0.540
3lqfNADGalactitol dehydrogenase/0.538
2d1yNADOxidoreductase, short-chain dehydrogenase/reductase family/0.525
2hsdNAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase1.1.1.530.523
1g6kNADGlucose 1-dehydrogenase1.1.1.470.519
4dmmNAP3-oxoacyl-[acyl-carrier-protein] reductase/0.514
4hbgNDP3-oxoacyl-[acyl-carrier-protein] reductase1.1.1.1000.509
1ipeNDPTropinone reductase 21.1.1.2360.507
2bgmNAJSecoisolariciresinol dehydrogenase1.1.1.3310.504
5b1yNDP3-oxoacyl-[acyl-carrier-protein] reductase/0.503
1x7hNDPPutative ketoacyl reductase1.3.10.501
4esoNAPPutative oxidoreductase/0.499
3o03NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase)/0.497
4bmsNAPAlclohol dehydrogenase/short-chain dehydrogenase/0.497
4uwmFMN3,6-diketocamphane 1,6 monooxygenase1.14.130.495
1ae1NAPTropinone reductase 1/0.492
1u7tNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.491
4egbNADdTDP-glucose 4,6-dehydratase/0.491
2q2qNADBeta-D-hydroxybutyrate dehydrogenase/0.490
3toxNAPPutative oxidoreductase/0.486
4fj1NAP17beta-hydroxysteroid dehydrogenase/0.486
4q71FADBifunctional protein PutA/0.485
5jlaNADPutative short-chain dehydrogenase/reductase/0.485
4biiPYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.481
2wyvNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.479
1bsvNDPGDP-L-fucose synthase/0.478
1pjcNADAlanine dehydrogenase/0.478
2hdhNADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.478
3ru9NADUDP-N-acetylglucosamine 4-epimerase/0.478
3tscNADUncharacterized protein/0.478
1b2lNDCAlcohol dehydrogenase1.1.1.10.477
3zw9NADPeroxisomal bifunctional enzyme1.1.1.350.476
2o23NAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.475
3orfNADDihydropteridine reductase1.5.1.340.475
1p44NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.474
3rucNADUDP-N-acetylglucosamine 4-epimerase/0.474
3qrwNDPPutative ketoacyl reductase1.3.10.473
5js6NAD17-beta-hydroxysteroid dehydrogenase 141.1.10.473
1dirNADDihydropteridine reductase1.5.1.340.471
1jioDEB6-deoxyerythronolide B hydroxylase/0.471
4bb3KKAIsopenicillin N synthase1.21.3.10.471
4nd3NADLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase/0.471
1vyrFMNPentaerythritol tetranitrate reductase/0.470
1xe65FPPlasmepsin-23.4.23.390.470
2b37NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.470
3ruhNADUDP-N-acetylglucosamine 4-epimerase/0.470
1bvrNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.469
2b4qNAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase1.1.1.1000.469
3nugNADPyridoxal 4-dehydrogenase1.1.1.1070.469
3ruaNADUDP-N-acetylglucosamine 4-epimerase/0.469
4gavFADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial1.6.5.90.468
1e6wNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.467
4fn4NADShort chain dehydrogenase/0.467
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.466
1fmlRTLRetinol dehydratase/0.465
1xe55FEPlasmepsin-23.4.23.390.465
2jb4A14Isopenicillin N synthase1.21.3.10.465
3atzFMNProstaglandin F2a synthase/0.465
1obnASVIsopenicillin N synthase1.21.3.10.464
2q1wNADPutative nucleotide sugar epimerase/ dehydratase/0.464
3ctyFADProbable thioredoxin reductase/0.464
3rueNADUDP-N-acetylglucosamine 4-epimerase/0.464
5jsfNAD17-beta-hydroxysteroid dehydrogenase 141.1.10.464
1g0nNDPTetrahydroxynaphthalene reductase1.1.1.2520.463
1nuuNADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.463
1zemNADXylitol dehydrogenase/0.463
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.463
3ndrNADPyridoxal 4-dehydrogenase1.1.1.1070.463
3p3zP3ZPutative cytochrome P450/0.463
3sx2NADUncharacterized protein/0.463
4ure1PSCyclohexanol dehydrogenase/0.463
5koiNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.463
1f17NAIHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.462
1x7gNAPPutative ketoacyl reductase1.3.10.462
2xpuTDCTetracycline repressor protein class D/0.462
3d84NDPDihydrofolate reductase1.5.1.30.462
3oqfS51Renin3.4.23.150.462
3w8dNAD3-hydroxybutyrate dehydrogenase/0.462
4g74FADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial1.6.5.90.462
5dp2NAPCurF/0.462
1d4aFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.461
2q9fC3SCholesterol 24-hydroxylase/0.461
3zkyWT4Isopenicillin N synthase1.21.3.10.461
4o1mNADEnoyl-acyl carrier reductase/0.461
3ai3NDPNADPH-sorbose reductase/0.460
3idsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.460
4ef8FMNDihydroorotate dehydrogenase (fumarate)/0.460
4r21STRCytochrome P450 family 17 polypeptide 2/0.460
4wecNADShort chain dehydrogenase/0.460
4zjuNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.460
1h5qNAPNADP-dependent mannitol dehydrogenase1.1.1.1380.459
1n2sNAIdTDP-4-dehydrorhamnose reductase1.1.1.1330.459
4ipw1G7Mycocyclosin synthase1.14.21.90.459
4mihFADPyranose 2-oxidase1.1.3.100.459
5hbrCOAAcyl-CoA synthetase (NDP forming)/0.459
1bwsNDPGDP-L-fucose synthase/0.458
2ag5NAD3-hydroxybutyrate dehydrogenase type 2/0.458
2ejvNADL-threonine 3-dehydrogenase/0.458
3ai2NDPNADPH-sorbose reductase/0.458
3gvhNADMalate dehydrogenase/0.458
1hb1OCVIsopenicillin N synthase1.21.3.10.457
1ma0NADAlcohol dehydrogenase class-31.1.1.10.457
1pqc444Oxysterols receptor LXR-beta/0.457
1udaUFGUDP-glucose 4-epimerase5.1.3.20.457
2c29NAPDihydroflavonol 4-reductase/0.457
3ru7NADUDP-N-acetylglucosamine 4-epimerase/0.457
1a9zUPGUDP-glucose 4-epimerase5.1.3.20.456
1e3wNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.456
2ydxNAPMethionine adenosyltransferase 2 subunit beta/0.456
3bgxMEFThymidylate synthase/0.456
3c1y2BADNA integrity scanning protein DisA/0.456
3wdsNADNADH-dependent quinuclidinone reductase/0.456
4anx534Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.456
4gddNAIUDP-galactopyranose mutase/0.456
1hdcCBO3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase1.1.1.530.455
1hdrNADDihydropteridine reductase1.5.1.340.455
1v9aSAHUncharacterized protein/0.455
2qo9ANPEphrin type-A receptor 32.7.10.10.455
3ivgFG5Pantothenate synthetase6.3.2.10.455
3qt62P0Mevalonate diphosphate decarboxylase/0.455
4e5yNDPGDP-L-fucose synthase1.1.1.2710.455
4ke11R6Beta-secretase 13.4.23.460.455
4q73FADBifunctional protein PutA/0.455
1bk0ACVIsopenicillin N synthase1.21.3.10.454
1ddrMTXDihydrofolate reductase1.5.1.30.454
1gcoNADGlucose 1-dehydrogenase1.1.1.470.454
1gpdNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.454
3q43D66M1 family aminopeptidase3.4.110.454
3rudNADUDP-N-acetylglucosamine 4-epimerase/0.454
4l4xNDPAmphI/0.454
4u7wNDPMxaA/0.454
5hs1VORLanosterol 14-alpha demethylase/0.454
1kboFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.453
1kc1NDPdTDP-4-dehydrorhamnose reductase1.1.1.1330.453
2b36NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.453
2cmjNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.453
3zhrTPPMultifunctional 2-oxoglutarate metabolism enzyme1.2.4.20.453
4b79NADProbable short-chain dehydrogenase/0.453
4yaiNAIC alpha-dehydrogenase/0.453
4yr9NADL-threonine 3-dehydrogenase, mitochondrial1.1.1.1030.453
1bxkNADdTDP-glucose 4,6-dehydratase 2/0.452
1hb3SCVIsopenicillin N synthase1.21.3.10.452
2b69NADUDP-glucuronic acid decarboxylase 14.1.1.350.452
2oapANPType II secretion system protein (GspE-2)/0.452
3docNADGlyceraldehyde-3-phosphate dehydrogenase/0.452
3e8xNAPBH1520 protein/0.452
3r9uFADThioredoxin reductase/0.452
4jicFMNGTN Reductase/0.452
4nmbFADBifunctional protein PutA/0.452
1g1aNADdTDP-glucose 4,6-dehydratase/0.451
1rm4NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.451
2ep7NADGlyceraldehyde-3-phosphate dehydrogenase/0.451
2fw3BUICarnitine O-palmitoyltransferase 2, mitochondrial2.3.1.210.451
2gcgNDPGlyoxylate reductase/hydroxypyruvate reductase1.1.1.790.451
2y99NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase1.3.1.560.451
3ak4NADNADH-dependent quinuclidinone reductase/0.451
3etgNDPGlutamate dehydrogenase 1, mitochondrial1.4.1.30.451
3ggoNAIPrephenate dehydrogenase/0.451
4ips1G4Mycocyclosin synthase1.14.21.90.451
2xpvMIYTetracycline repressor protein class D/0.450
3p19NDPPutative blue fluorescent protein/0.450
3sjuNDPKeto reductase/0.450
4enhFVXCholesterol 24-hydroxylase/0.450
4kugNAD3-hydroxybutyryl-CoA dehydrogenase/0.450
4wriOKAOkadaic acid binding protein 2-alpha/0.450
1dhrNADDihydropteridine reductase1.5.1.340.449
2he5NDPAldo-keto reductase family 1 member C211.1.10.449
3autNAIGlucose 1-dehydrogenase 41.1.1.470.449
3drcMTXDihydrofolate reductase1.5.1.30.449
3hyoADPPyridoxal kinase/0.449
3mpiFADGlutaryl-CoA dehydrogenase1.3.99.320.449
4g7gVFVLanosterol 14-alpha-demethylase/0.449
1ib0NADNADH-cytochrome b5 reductase 31.6.2.20.448
2iviACWIsopenicillin N synthase1.21.3.10.448
2ztuNADD(-)-3-hydroxybutyrate dehydrogenase/0.448
3hadNADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.448
3lu1NADUDP-N-acetylglucosamine 4-epimerase/0.448
1cydNDPCarbonyl reductase [NADPH] 21.1.1.1840.447
2f1kNAPPrephenate dehydrogenase/0.447
2ok7FADFerredoxin--NADP reductase, apicoplast/0.447
2tctCTCTetracycline repressor protein class D/0.447
2xfjVG5Beta-secretase 13.4.23.460.447
2xfsJ01Uncharacterized protein/0.447
2zjaACPATP-dependent DNA helicase Hel308/0.447
3hdhNADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.447
3zoiM2WIsopenicillin N synthase1.21.3.10.447
4a83DXCMajor pollen allergen Bet v 1-A/0.447
4h3g10QBeta-secretase 13.4.23.460.447
4nmdFDABifunctional protein PutA/0.447
5cpbNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.447
5jy1NADPutative short-chain dehydrogenase/reductase/0.447
1dbvNADGlyceraldehyde-3-phosphate dehydrogenase/0.446
1kr2TADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 12.7.7.10.446
1xddAAYIntegrin alpha-L/0.446
2fr1NDP6-deoxyerythronolide-B synthase EryA1, modules 1 and 2/0.446
3oetNADErythronate-4-phosphate dehydrogenase/0.446
3otbDGTProbable tRNA(His) guanylyltransferase2.7.7.790.446
3zeiAWHO-acetylserine sulfhydrylase/0.446
4ocvANPAminoglycoside phosphotransferase/0.446
4yagNAIC alpha-dehydrogenase/0.446
1h66FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.445
1lsjNADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.445
1ywgNADGlyceraldehyde-3-phosphate dehydrogenase/0.445
2ed4NAD4-hydroxyphenylacetate 3-monooxygenase reductase component1.5.1.360.445
2vbdV10Isopenicillin N synthase1.21.3.10.445
3b6zCO7Enoyl reductase LovC10.445
3duyAFJBeta-secretase 13.4.23.460.445
3ggpNADPrephenate dehydrogenase/0.445
3p62FMNPentaerythritol tetranitrate reductase/0.445
3s1dZIRCytokinin dehydrogenase 11.5.99.120.445
4a81DXCMajor pollen allergen Bet v 1-A/0.445
4lxjLANLanosterol 14-alpha demethylase1.14.13.700.445
4y0kNAPAntE/0.445
1b15NAEAlcohol dehydrogenase1.1.1.10.444
1mjaCOAHistone acetyltransferase ESA1/0.444
1nupNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.444
1t0lNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.444
3b70NAPEnoyl reductase LovC10.444
3wleNAD(R)-specific carbonyl reductase/0.444
3zhbNAPPutative dehydrogenase/0.444
4g3jVNTLanosterol 14-alpha-demethylase/0.444
4gv4MEJPoly [ADP-ribose] polymerase 32.4.2.300.444
4twrNADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase/0.444
1dhfFOLDihydrofolate reductase1.5.1.30.443
2abjCBCBranched-chain-amino-acid aminotransferase, cytosolic2.6.1.420.443
2hmaSAMtRNA-specific 2-thiouridylase MnmA/0.443
2wdzNADGalactitol dehydrogenase/0.443
4cr8NADN-acylmannosamine 1-dehydrogenase1.1.1.2330.443
4q72FADBifunctional protein PutA/0.443
4xguADPPutative pachytene checkpoint protein 2/0.443
1nzfUPGDNA beta-glucosyltransferase/0.442
1zidZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.442
2fm5M99cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.442
2fy4COACholine O-acetyltransferase2.3.1.60.442
2gn8NAPUDP-N-acetylglucosamine 4,6-dehydratase (inverting)4.2.1.1150.442
2j07HDFDeoxyribodipyrimidine photo-lyase4.1.99.30.442
2y60M8FIsopenicillin N synthase1.21.3.10.442
2ztlNADD(-)-3-hydroxybutyrate dehydrogenase/0.442
3eheNADUDP-glucose 4-epimerase (GalE-1)/0.442
3h3r14HCollagen type IV alpha-3-binding protein/0.442
3p2eSAH16S rRNA (adenine(1408)-N(1))-methyltransferase2.1.1.1800.442
4oqyNDP(S)-imine reductase/0.442
1jtvTESEstradiol 17-beta-dehydrogenase 11.1.1.620.441
1k6cMK1Gag-Pol polyprotein3.4.23.160.441
1x1aSAMC-20 methyltransferase/0.441
2oorNADNAD(P) transhydrogenase subunit alpha part 11.6.1.20.441
2rcyNAPPyrroline-5-carboxylate reductase/0.441
2rhrEMOPutative ketoacyl reductase1.3.10.441
2y6fM9FIsopenicillin N synthase1.21.3.10.441
2zb3NDPProstaglandin reductase 21.3.1.480.441
3h3qH13Collagen type IV alpha-3-binding protein/0.441
3iocA5DPantothenate synthetase6.3.2.10.441
3mvqNDPGlutamate dehydrogenase 1, mitochondrial1.4.1.30.441
3pqbVGPPutative oxidoreductase/0.441
4dreNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.441
4m83ERYOleandomycin glycosyltransferase2.4.10.441
5a3cNADSIR2 family protein/0.441
1eupASD6-deoxyerythronolide B hydroxylase/0.440
1kvsUPGUDP-glucose 4-epimerase5.1.3.20.440
1mvsDTMDihydrofolate reductase1.5.1.30.440
1qbgFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.440
2eklNADD-3-phosphoglycerate dehydrogenase/0.440
3c3xNAPEugenol synthase 11.1.1.3180.440
3ksdNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.440
3p74FMNPentaerythritol tetranitrate reductase/0.440
4b1rITCTetracycline repressor protein class D/0.440
4b3aTACTetracycline repressor protein class D/0.440
4ktkKTKCytochrome P450/0.440
4kwhNAPReductase homolog/0.440
4y1bNAPAntE/0.440
5eaiFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.440