1.470 Å
X-ray
2014-01-09
Name: | Aminoglycoside phosphotransferase |
---|---|
ID: | B7GN78_BIFLS |
AC: | B7GN78 |
Organism: | Bifidobacterium longum subsp. infantis |
Reign: | Bacteria |
TaxID: | 391904 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 14.788 |
---|---|
Number of residues: | 36 |
Including | |
Standard Amino Acids: | 33 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.963 | 786.375 |
% Hydrophobic | % Polar |
---|---|
48.50 | 51.50 |
According to VolSite |
HET Code: | ANP |
---|---|
Formula: | C10H13N6O12P3 |
Molecular weight: | 502.164 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 62.89 % |
Polar Surface area: | 322.68 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 16 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
7.2809 | 38.876 | -22.1147 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C1' | CE2 | TYR- 27 | 3.58 | 0 | Hydrophobic |
O2G | N | HIS- 31 | 3.43 | 155.86 | H-Bond (Protein Donor) |
O3G | N | ILE- 32 | 2.63 | 142.08 | H-Bond (Protein Donor) |
O1B | N | ILE- 32 | 3 | 144.27 | H-Bond (Protein Donor) |
O1B | N | ASN- 33 | 2.93 | 143.2 | H-Bond (Protein Donor) |
O2A | NE2 | GLN- 48 | 2.7 | 149.53 | H-Bond (Protein Donor) |
N6 | O | LYS- 103 | 3.07 | 128.72 | H-Bond (Ligand Donor) |
N1 | N | ILE- 105 | 2.93 | 174.71 | H-Bond (Protein Donor) |
O1G | NZ | LYS- 210 | 3.37 | 0 | Ionic (Protein Cationic) |
O2G | NZ | LYS- 210 | 2.78 | 0 | Ionic (Protein Cationic) |
O2G | NZ | LYS- 210 | 2.78 | 156.12 | H-Bond (Protein Donor) |
C2' | CD1 | ILE- 227 | 3.71 | 0 | Hydrophobic |
O1G | O | HOH- 949 | 3.4 | 136.35 | H-Bond (Protein Donor) |