2.000 Å
X-ray
2016-01-02
| Name: | Acyl-CoA synthetase (NDP forming) |
|---|---|
| ID: | B1L3C9_KORCO |
| AC: | B1L3C9 |
| Organism: | Korarchaeum cryptofilum |
| Reign: | Archaea |
| TaxID: | 374847 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 2 % |
| C | 98 % |
| B-Factor: | 48.341 |
|---|---|
| Number of residues: | 43 |
| Including | |
| Standard Amino Acids: | 41 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.995 | 1660.500 |
| % Hydrophobic | % Polar |
|---|---|
| 45.93 | 54.07 |
| According to VolSite | |

| HET Code: | COA |
|---|---|
| Formula: | C21H32N7O16P3S |
| Molecular weight: | 763.502 g/mol |
| DrugBank ID: | DB01992 |
| Buried Surface Area: | 49.5 % |
| Polar Surface area: | 426.11 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 21 |
| H-Bond Donors: | 6 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 3 |
| Rotatable Bonds: | 18 |
| X | Y | Z |
|---|---|---|
| 89.0111 | -40.77 | 65.932 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O7A | OG | SER- 19 | 2.62 | 138.68 | H-Bond (Protein Donor) |
| O7A | NZ | LYS- 24 | 2.57 | 162.57 | H-Bond (Protein Donor) |
| O2A | NZ | LYS- 24 | 2.84 | 152.12 | H-Bond (Protein Donor) |
| O7A | NZ | LYS- 24 | 2.57 | 0 | Ionic (Protein Cationic) |
| O9A | NZ | LYS- 24 | 3.87 | 0 | Ionic (Protein Cationic) |
| O2A | NZ | LYS- 24 | 2.84 | 0 | Ionic (Protein Cationic) |
| CEP | CG1 | ILE- 25 | 3.52 | 0 | Hydrophobic |
| O8A | ND2 | ASN- 46 | 3 | 174.51 | H-Bond (Protein Donor) |
| C1B | CG | PRO- 47 | 4 | 0 | Hydrophobic |
| C5B | CG1 | VAL- 75 | 4.22 | 0 | Hydrophobic |
| CCP | CG | PRO- 76 | 4.22 | 0 | Hydrophobic |
| C6P | CG2 | ILE- 98 | 4.3 | 0 | Hydrophobic |
| N4P | O | ILE- 98 | 3.22 | 160.42 | H-Bond (Ligand Donor) |
| CDP | CG2 | THR- 99 | 4.05 | 0 | Hydrophobic |
| O9P | N | SER- 100 | 2.82 | 169.59 | H-Bond (Protein Donor) |
| C6P | CB | SER- 100 | 4.32 | 0 | Hydrophobic |
| S1P | CB | PHE- 131 | 4.18 | 0 | Hydrophobic |
| OAP | O | HOH- 656 | 2.75 | 169.23 | H-Bond (Protein Donor) |
| O4A | O | HOH- 673 | 3.06 | 179.98 | H-Bond (Protein Donor) |