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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4fj2QSO17beta-hydroxysteroid dehydrogenase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
4fj2QSO17beta-hydroxysteroid dehydrogenase/1.000
4fj1GEN17beta-hydroxysteroid dehydrogenase/0.628
3qwiCUE17beta-hydroxysteroid dehydrogenase/0.624
4fizCUE17beta-hydroxysteroid dehydrogenase/0.615
4fj0HHF17beta-hydroxysteroid dehydrogenase/0.598
3qwhKMP17beta-hydroxysteroid dehydrogenase/0.573
3jswJARHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.504
2g0gSP0Peroxisome proliferator-activated receptor gamma/0.497
3dy8IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.496
4gdy0X1Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.493
4b144XBGlycylpeptide N-tetradecanoyltransferase/0.490
3emlZMAAdenosine receptor A2a/0.486
2c9zQUEAnthocyanidin 3-O-glucosyltransferase 22.4.1.1150.485
3sn7540cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.485
3k3ePDBHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.481
3p3zP3ZPutative cytochrome P450/0.481
1siqFADGlutaryl-CoA dehydrogenase, mitochondrial1.3.8.60.480
1db56INPhospholipase A2, membrane associated/0.479
3dysIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.479
1o6qR17Squalene--hopene cyclase4.2.1.1290.477
4yauFADNADPH--cytochrome P450 reductase/0.475
3sni546cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.474
1pq944BOxysterols receptor LXR-beta/0.473
3k3hBYEHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.473
3byzH11Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.472
3c1tMYCDihydroflavonol 4-reductase1.1.1.2190.472
1kquBR4Phospholipase A2, membrane associated/0.471
3u2lFADFAD-linked sulfhydryl oxidase ALR1.8.3.20.471
3dylIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.470
1diuBDMDihydrofolate reductase1.5.1.30.469
3dheANDEstradiol 17-beta-dehydrogenase 11.1.1.620.469
4j7xSASSepiapterin reductase1.1.1.1530.469
4blcNDPCatalase1.11.1.60.467
1fcy564Retinoic acid receptor gamma/0.466
3dy85GPHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.466
3w78CBDFMN-dependent NADH-azoreductase/0.466
4fevPP1Aminoglycoside 3'-phosphotransferase AphA1-IAB/0.466
4gh6LUOHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.466
3uzcT4EAdenosine receptor A2a/0.466
1al8DHPPeroxisomal (S)-2-hydroxy-acid oxidase1.1.3.150.465
1p44GEQEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.465
3ielU5PRibonuclease TTHA02523.10.465
3k2fNKXCarbonic anhydrase 24.2.1.10.465
3pqbVGPPutative oxidoreductase/0.465
2dvlFADAcyl-CoA dehydrogenase/0.464
3ix4TX1Transcriptional activator protein LasR/0.464
4g2l0WLHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.464
4lb2DM5Serum albumin/0.464
1fd0254Retinoic acid receptor gamma/0.463
1qiqACCIsopenicillin N synthase1.21.3.10.463
1zknIBMcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.463
3gwnFADProbable FAD-linked sulfhydryl oxidase R5961.8.3.20.463
3hl0NADMaleylacetate reductase/0.463
2ourCMPcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.462
2weyEV1cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.462
5p2pDHGPhospholipase A2, major isoenzyme3.1.1.40.462
1kvoOAPPhospholipase A2, membrane associated/0.461
2f3815MAldo-keto reductase family 1 member C3/0.461
2vcmM11Isopenicillin N synthase1.21.3.10.461
2wsa646Glycylpeptide N-tetradecanoyltransferase/0.461
2zu9GDPMannosyl-3-phosphoglycerate synthase2.4.1.2170.461
3qm4PN0Cytochrome P450 2D6/0.461
4b117I1Glycylpeptide N-tetradecanoyltransferase/0.461
4dvq1CACytochrome P450 11B2, mitochondrial1.14.15.40.461
4j6cSTRCytochrome P450 monooxygenase/0.461
3da24MDCarbonic anhydrase 134.2.1.10.460
4myq19TcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.460
1ndzFR5Adenosine deaminase3.5.4.40.459
1ttm667Carbonic anhydrase 24.2.1.10.459
2oymMNIEndoglycoceramidase II/0.459
4cax646Glycylpeptide N-tetradecanoyltransferase2.3.1.970.459
4j6bPLOCytochrome P450 monooxygenase/0.459
1blzACVIsopenicillin N synthase1.21.3.10.458
1cqp803Integrin alpha-L/0.458
1zdwFLVPrenyltransferase/0.458
1zgaHMKIsoflavone 4'-O-methyltransferase/0.458
2f98NGVAklanonic acid methyl ester cyclase AcmA5.5.1.230.458
2iltNN1Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.458
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.458
4uy6SAHHistidine N-alpha-methyltransferase/0.458
2lbdREARetinoic acid receptor gamma/0.457
2wo7ASVIsopenicillin N synthase1.21.3.10.457
3jsiWTCHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.457
3lz6A0DCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.457
4hf415HcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.457
1ry0PG2Aldo-keto reductase family 1 member C3/0.456
1uzwCDHIsopenicillin N synthase1.21.3.10.456
2vbdV10Isopenicillin N synthase1.21.3.10.456
3nly3XCNitric oxide synthase, brain1.14.13.390.456
3qj0QI3Botulinum neurotoxin type A3.4.24.690.456
4a87NARMajor pollen allergen Bet v 1-A/0.456
1umlFR4Adenosine deaminase3.5.4.40.455
1xomCIOcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.455
2j9fTHV2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial1.2.4.40.455
2j9fTHV2-oxoisovalerate dehydrogenase subunit beta, mitochondrial1.2.4.40.455
3iro2CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.455
3n5xXFKNitric oxide synthase, brain1.14.13.390.455
3v94WYQPhosphodiesterase/0.455
4ead0NPThymidine phosphorylase2.4.2.40.455
4ipw1G7Mycocyclosin synthase1.14.21.90.455
4mvh2F5cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.455
1ddtAPUDiphtheria toxin/0.454
1hfqMOTDihydrofolate reductase1.5.1.30.454
2fm5M99cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.454
3tvxPNXcAMP-specific 3',5'-cyclic phosphodiesterase 4A3.1.4.530.454
3vg9ZMAAdenosine receptor A2a/0.454
4uymVOR14-alpha sterol demethylase Cyp51B/0.454
5fd8A5APutative carboxypeptidase yocD/0.454
1fvpFMANon-fluorescent flavoprotein/0.453
1hb3SCVIsopenicillin N synthase1.21.3.10.453
1obnASVIsopenicillin N synthase1.21.3.10.453
1srhMOBStreptavidin/0.453
1y2k7DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.453
2bjsACVIsopenicillin N synthase1.21.3.10.453
2obxINI6,7-dimethyl-8-ribityllumazine synthase 22.5.1.780.453
2xvfFADPutative flavin-containing monooxygenase/0.453
2xviFADPutative flavin-containing monooxygenase/0.453
3pd3A3TThreonine--tRNA ligase6.1.1.30.453
3q9bB3NAcetylpolyamine amidohydrolase/0.453
3qe2FADNADPH--cytochrome P450 reductase/0.453
3zhtTD9Multifunctional 2-oxoglutarate metabolism enzyme1.2.4.20.453
4a959MTGlycylpeptide N-tetradecanoyltransferase/0.453
4boeCLRJapanin/0.453
4gqiM49Ribosyldihydronicotinamide dehydrogenase [quinone]/0.453
4hw319GInduced myeloid leukemia cell differentiation protein Mcl-1/0.453
1zg32HIIsoflavone 4'-O-methyltransferase/0.452
2qd4CHDFerrochelatase, mitochondrial4.99.1.10.452
2x9dITCTetracycline repressor protein class D/0.452
2xtbKRMAdenosine kinase, putative/0.452
2z7gEH9Adenosine deaminase3.5.4.40.452
3tdaPN0Cytochrome P450 2D6/0.452
3uic09TEnoyl-[acyl-carrier-protein] reductase [NADH]/0.452
4jq4IMNAldo-keto reductase family 1 member C2/0.452
1crbRTLRetinol-binding protein 1/0.451
1f4gTP4Thymidylate synthase/0.451
1q0rAKTAclacinomycin methylesterase RdmC3.1.1.950.451
2jb4A14Isopenicillin N synthase1.21.3.10.451
3d4bDZDNAD-dependent protein deacetylase/0.451
4bgePYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.451
4ddl0JQcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.451
4dm6TTBRetinoic acid receptor beta/0.451
4geb0LDKynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.451
4l1xSTRAldo-keto reductase family 1 member C2/0.451
2yczI32Beta-1 adrenergic receptor/0.451
1dgfNDPCatalase1.11.1.60.450
1hb1OCVIsopenicillin N synthase1.21.3.10.450
1icqOPD12-oxophytodienoate reductase 11.3.1.420.450
1r2jFADFkbI/0.450
1v7aFRCAdenosine deaminase3.5.4.40.450
2h15B19Carbonic anhydrase 24.2.1.10.450
2q7oIMHPurine nucleoside phosphorylase2.4.2.10.450
3a1l2CCCytochrome P450/0.450
3p99LNPLanosterol 14-alpha-demethylase/0.450
4b4w9L9Bifunctional protein FolD/0.450
4j6dTESCytochrome P450 monooxygenase/0.450
1ly4COQDihydrofolate reductase1.5.1.30.449
1mczRMNBenzoylformate decarboxylase4.1.1.70.449
1y6oMJIPhospholipase A2, major isoenzyme3.1.1.40.449
2iyaZIOOleandomycin glycosyltransferase/0.449
2jbsFMNp-hydroxyphenylacetate 3-hydroxylase, oxygenase component/0.449
2zbaZBATrichothecene 3-O-acetyltransferase/0.449
3a25SAMtRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase/0.449
3c3dFO12-phospho-L-lactate transferase/0.449
3cmfPDN3-oxo-5-beta-steroid 4-dehydrogenase/0.449
3mbgFADFAD-linked sulfhydryl oxidase ALR1.8.3.20.449
3qlzQLZUncharacterized protein/0.449
4a312CBGlycylpeptide N-tetradecanoyltransferase/0.449
4jlm1NNDeoxycytidine kinase2.7.1.740.449
1bk0ACVIsopenicillin N synthase1.21.3.10.448
2ouyCMPcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.448
2y60M8FIsopenicillin N synthase1.21.3.10.448
3qlhT27Gag-Pol polyprotein2.7.7.490.448
3zkyWT4Isopenicillin N synthase1.21.3.10.448
4a86H35Major pollen allergen Bet v 1-A/0.448
4gki0JNAminoglycoside 3'-phosphotransferase AphA1-IAB/0.448
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.448
4jln18VDeoxycytidine kinase2.7.1.740.448
4lt63ATPoly(A) polymerase gamma2.7.7.190.448
4p9dTMPDeoxycytidylate deaminase/0.448
1bnnAL1Carbonic anhydrase 24.2.1.10.447
1w06W05Isopenicillin N synthase1.21.3.10.447
2ay95PVAromatic-amino-acid aminotransferase2.6.1.570.447
2hj3FADFAD-linked sulfhydryl oxidase ERV1/0.447
3u8dU8DPhospholipase A2, membrane associated/0.447
3uftH4BNitric oxide synthase, brain1.14.13.390.447
4f4dCHDFerrochelatase, mitochondrial4.99.1.10.447
4iwv1J9Glucokinase2.7.1.20.447
4phlPILPhosphodiesterase/0.447
4qzuRTLRetinol-binding protein 2/0.447
1ek2CDUBifunctional epoxide hydrolase 2/0.446
1opbRETRetinol-binding protein 2/0.446
1tlcF89Thymidylate synthase/0.446
2e20B4PPropionate kinase/0.446
2p1t3TNRetinoic acid receptor RXR-alpha/0.446
2vbpVB1Isopenicillin N synthase1.21.3.10.446
3c3xNAPEugenol synthase 11.1.1.3180.446
3nxtD2EDihydrofolate reductase1.5.1.30.446
3p9tTCLRepressor/0.446
4c2z646Glycylpeptide N-tetradecanoyltransferase 1/0.446
4e907RGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.446
4ky404JBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.446
1klkPMDDihydrofolate reductase1.5.1.30.445
1zklIBMHigh affinity cAMP-specific 3',5'-cyclic phosphodiesterase 7A3.1.4.530.445
2bu9HFVIsopenicillin N synthase1.21.3.10.445
2iodMYCDihydroflavonol 4-reductase1.1.1.2190.445
2ntvP1HEnoyl-[acyl-carrier-protein] reductase [NADH]/0.445
2w3aTOPDihydrofolate reductase1.5.1.30.445
3d3p20AcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.445
3f3y4OABile salt sulfotransferase2.8.2.140.445
3qi4IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.445
4a30QMIGlycylpeptide N-tetradecanoyltransferase/0.445
4bfuZVUPantothenate kinase2.7.1.330.445
4bgiI4IEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.445
4fcd0T6cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.445
4h9506UDihydrofolate reductase1.5.1.30.445
4hmn16JAldo-keto reductase family 1 member C3/0.445
5d7q4I5NAD-dependent protein deacetylase sirtuin-23.5.10.445
5stdUNNScytalone dehydratase4.2.1.940.445
1srfMTBStreptavidin/0.444
1uhoVDNcGMP-specific 3',5'-cyclic phosphodiesterase/0.444
1v79FR7Adenosine deaminase3.5.4.40.444
1xdsDRAAclacinomycin 10-hydroxylase RdmB4.1.10.444
2po7CHDFerrochelatase, mitochondrial4.99.1.10.444
3abaFLICytochrome P450/0.444
3c6uM22Gag-Pol polyprotein2.7.7.490.444
3h3sH15Collagen type IV alpha-3-binding protein/0.444
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]/0.444
3nhuM42Ribosyldihydronicotinamide dehydrogenase [quinone]/0.444
3vt9YI4Vitamin D3 receptor/0.444
4bfwZVWPantothenate kinase2.7.1.330.444
4i6f1C7Serine/threonine-protein kinase PLK22.7.11.210.444
4wo5324Serine/threonine-protein kinase B-raf2.7.11.10.444
1ohkCOPDihydrofolate reductase1.5.1.30.443
1xdkREARetinoic acid receptor beta/0.443
2g263LGRenin3.4.23.150.443
3ar4TG1Sarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.443
3dyqIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.443
3g45988cAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.443
3v0o4GWHisto-blood group ABO system transferase/0.443
4b2gV1NUncharacterized protein/0.443
4dliIRGMitogen-activated protein kinase 14/0.443
4egnTWOCytochrome P450/0.443
4kko1REGag-Pol polyprotein2.7.7.490.443
4l5b1UXDeoxycytidine kinase2.7.1.740.443
4y9uFADNADPH--cytochrome P450 reductase/0.443
3rfmCFFAdenosine receptor A2a/0.443
1kkq471Peroxisome proliferator-activated receptor alpha/0.442
1pq6965Oxysterols receptor LXR-beta/0.442
1t47NTD4-hydroxyphenylpyruvate dioxygenase1.13.11.270.442
1uhhCZPAequorin-2/0.442
1x8vESLLanosterol 14-alpha demethylase1.14.13.700.442
1xngDNDNH(3)-dependent NAD(+) synthetase6.3.1.50.442
2a4xBLMMitomycin-binding protein/0.442
2h42VIAcGMP-specific 3',5'-cyclic phosphodiesterase/0.442
2vq7FADPutative flavin-containing monooxygenase/0.442
2x7tWZBCarbonic anhydrase 24.2.1.10.442
3dhaC6LN-acyl homoserine lactonase AiiA3.1.1.810.442
3ssnMVIMycinamicin VI 2''-O-methyltransferase/0.442
3ufoHW4Nitric oxide synthase, brain1.14.13.390.442
4bbxLKFcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.442
4kak06UDihydrofolate reductase1.5.1.30.442
5kgpACOPredicted acetyltransferase/0.442
1aquESTEstrogen sulfotransferase, testis isoform2.8.2.40.441
1nceCB3Thymidylate synthase/0.441
1pkfEPDEpothilone C/D epoxidase1.140.441
1tezFADDeoxyribodipyrimidine photo-lyase4.1.99.30.441
1tl7ONMAdenylate cyclase type 2/0.441
1tl7ONMAdenylate cyclase type 5/0.441
2vcxD26Hematopoietic prostaglandin D synthase/0.441
2xveFADPutative flavin-containing monooxygenase/0.441
3c1oNAPEugenol synthase/0.441
3d2dRENReticuline oxidase1.21.3.30.441
4ap1NAPSteroid monooxygenase/0.441
4g2j0WFHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.441
4g8cC6LAlpha/beta hydrolase fold protein/0.441
4n16CHDCarbonic anhydrase 24.2.1.10.441
4u9zCOAAlpha-tubulin N-acetyltransferase 1/0.441
5iua6DXAdenosine receptor A2a/0.441
1bn1AL5Carbonic anhydrase 24.2.1.10.440
1c3x8IGPurine nucleoside phosphorylase2.4.2.10.440
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.440
1qy2IPZMajor urinary protein 1/0.440
2rqfJH3Hemolymph juvenile hormone binding protein/0.440
3biz61EWee1-like protein kinase2.7.10.20.440
3dylPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.440
3q44D50M1 family aminopeptidase3.4.110.440
3tfp03LDehydrosqualene synthase/0.440
3um81CYBifunctional dihydrofolate reductase-thymidylate synthase/0.440
3vtdTKDVitamin D3 receptor/0.440
4dyn0MRNucleoprotein/0.440
5g53NECAdenosine receptor A2a/0.440