2.400 Å
X-ray
2002-12-05
Name: | Thymidylate synthase |
---|---|
ID: | TYSY_ECOLI |
AC: | P0A884 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 83333 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 97 % |
B | 3 % |
B-Factor: | 37.086 |
---|---|
Number of residues: | 40 |
Including | |
Standard Amino Acids: | 37 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 2 |
Cofactors: | UMP |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.850 | 671.625 |
% Hydrophobic | % Polar |
---|---|
46.73 | 53.27 |
According to VolSite |
HET Code: | CB3 |
---|---|
Formula: | C24H21N5O6 |
Molecular weight: | 475.453 g/mol |
DrugBank ID: | DB03541 |
Buried Surface Area: | 60.35 % |
Polar Surface area: | 180.08 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 10 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 10 |
X | Y | Z |
---|---|---|
14.5192 | 14.4316 | 34.6325 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CP1 | CD1 | ILE- 79 | 4.05 | 0 | Hydrophobic |
C12 | CG2 | ILE- 79 | 4.4 | 0 | Hydrophobic |
C15 | CB | ILE- 79 | 3.56 | 0 | Hydrophobic |
C9 | CZ2 | TRP- 80 | 3.94 | 0 | Hydrophobic |
C8 | CZ2 | TRP- 83 | 3.33 | 0 | Hydrophobic |
C8 | CD2 | LEU- 143 | 3.64 | 0 | Hydrophobic |
CB | CE2 | PHE- 176 | 4.32 | 0 | Hydrophobic |
CP1 | CD1 | PHE- 176 | 4.33 | 0 | Hydrophobic |
CP3 | CB | PHE- 176 | 3.72 | 0 | Hydrophobic |
NA2 | O | ALA- 263 | 2.61 | 122.03 | H-Bond (Ligand Donor) |
C7 | C5 | UMP- 565 | 3.94 | 0 | Hydrophobic |
O1 | O | HOH- 587 | 2.8 | 129.88 | H-Bond (Protein Donor) |
OE2 | O | HOH- 651 | 2.82 | 179.99 | H-Bond (Protein Donor) |