2.340 Å
X-ray
2010-03-15
| Name: | Tetracycline repressor protein class D |
|---|---|
| ID: | TETR4_ECOLX |
| AC: | P0ACT4 |
| Organism: | Escherichia coli |
| Reign: | Bacteria |
| TaxID: | 562 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 43.392 |
|---|---|
| Number of residues: | 29 |
| Including | |
| Standard Amino Acids: | 29 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.427 | 745.875 |
| % Hydrophobic | % Polar |
|---|---|
| 50.68 | 49.32 |
| According to VolSite | |

| HET Code: | ITC |
|---|---|
| Formula: | C22H22ClN2O8 |
| Molecular weight: | 477.872 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 59.51 % |
| Polar Surface area: | 174.31 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 8 |
| H-Bond Donors: | 3 |
| Rings: | 4 |
| Aromatic rings: | 1 |
| Anionic atoms: | 2 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 3 |
| X | Y | Z |
|---|---|---|
| 21.6758 | 36.7722 | 34.4675 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O3 | NE2 | HIS- 64 | 3.18 | 164.5 | H-Bond (Protein Donor) |
| O3 | ND2 | ASN- 82 | 2.93 | 155.21 | H-Bond (Protein Donor) |
| N4 | OD1 | ASN- 82 | 2.65 | 139.62 | H-Bond (Ligand Donor) |
| C10 | CD | ARG- 104 | 3.96 | 0 | Hydrophobic |
| C6B | CG | PRO- 105 | 4.39 | 0 | Hydrophobic |
| C5B | CG | PRO- 105 | 4.41 | 0 | Hydrophobic |
| O3 | NE2 | GLN- 116 | 3.15 | 122.23 | H-Bond (Protein Donor) |
| C6' | CD1 | LEU- 131 | 4.25 | 0 | Hydrophobic |
| C5 | CG2 | ILE- 134 | 4.1 | 0 | Hydrophobic |
| C6' | CG2 | ILE- 134 | 3.49 | 0 | Hydrophobic |
| CL7 | CB | SER- 135 | 4.13 | 0 | Hydrophobic |
| C4A | CB | SER- 138 | 4.29 | 0 | Hydrophobic |
| C5A | CB | SER- 138 | 4.38 | 0 | Hydrophobic |
| CL7 | CB | SER- 138 | 3.65 | 0 | Hydrophobic |