2.020 Å
X-ray
2012-05-24
Name: | cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A |
---|---|
ID: | PDE10_HUMAN |
AC: | Q9Y233 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 3.1.4.17 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 36.698 |
---|---|
Number of residues: | 33 |
Including | |
Standard Amino Acids: | 29 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 2 |
Cofactors: | |
Metals: | ZN MG |
Ligandability | Volume (Å3) |
---|---|
0.961 | 732.375 |
% Hydrophobic | % Polar |
---|---|
51.15 | 48.85 |
According to VolSite |
HET Code: | 0T6 |
---|---|
Formula: | C18H15ClN4O2 |
Molecular weight: | 354.790 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 55.21 % |
Polar Surface area: | 61.54 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 0 |
Rings: | 4 |
Aromatic rings: | 4 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 3 |
X | Y | Z |
---|---|---|
20.6452 | -11.0909 | -35.3962 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C1 | CZ | TYR- 514 | 4.45 | 0 | Hydrophobic |
C8 | CD2 | LEU- 625 | 4.19 | 0 | Hydrophobic |
C9 | CB | LEU- 625 | 4.16 | 0 | Hydrophobic |
C8 | CD2 | LEU- 665 | 3.74 | 0 | Hydrophobic |
C1 | CG1 | VAL- 668 | 4.04 | 0 | Hydrophobic |
C1 | CD1 | ILE- 682 | 3.54 | 0 | Hydrophobic |
CL1 | CG2 | ILE- 682 | 4.12 | 0 | Hydrophobic |
CL1 | CZ | PHE- 686 | 3.46 | 0 | Hydrophobic |
C17 | SD | MET- 703 | 4.25 | 0 | Hydrophobic |
C18 | SD | MET- 703 | 3.69 | 0 | Hydrophobic |
C15 | SD | MET- 703 | 3.65 | 0 | Hydrophobic |
N2 | NE2 | GLN- 716 | 3.1 | 174.47 | H-Bond (Protein Donor) |
C16 | CB | PHE- 719 | 4.38 | 0 | Hydrophobic |
C17 | CB | PHE- 719 | 3.7 | 0 | Hydrophobic |
DuAr | DuAr | PHE- 719 | 3.94 | 0 | Aromatic Face/Face |