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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4ce17FKATP-dependent molecular chaperone HSP82

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
4ce17FKATP-dependent molecular chaperone HSP82/1.000
4ce2BO5ATP-dependent molecular chaperone HSP82/0.683
1am1ADPATP-dependent molecular chaperone HSP82/0.658
2breKJ2ATP-dependent molecular chaperone HSP82/0.634
2bz5AB4Heat shock protein HSP 90-alpha/0.626
2qg0A94Heat shock protein HSP 90-alpha/0.625
3r4pFU7Heat shock protein HSP 90-alpha/0.624
2cgfP2NATP-dependent molecular chaperone HSP82/0.618
1u0zRDCEndoplasmin/0.617
2xd6XD6ATP-dependent molecular chaperone HSP82/0.616
1osfKOSHeat shock protein HSP 90-alpha/0.609
3vhaVHAHeat shock protein HSP 90-alpha/0.607
2xk2ADPHeat shock protein HSP 90-alpha/0.602
2iwxM1SATP-dependent molecular chaperone HSP82/0.597
1yc34BCHeat shock protein HSP 90-alpha/0.594
3ekrPY9Heat shock protein HSP 90-alpha/0.594
1yszNECEndoplasmin/0.593
2bt0CT5Heat shock protein HSP 90-alpha/0.593
3hhu819Heat shock protein HSP 90-alpha/0.591
1u2oNECEndoplasmin/0.588
2brcCT5ATP-dependent molecular chaperone HSP82/0.587
2iwuNP5ATP-dependent molecular chaperone HSP82/0.587
4bqjXKLHeat shock protein HSP 90-alpha/0.585
4as94QSATP-dependent molecular chaperone HSP82/0.584
1amwADPATP-dependent molecular chaperone HSP82/0.583
2yegXQGHeat shock protein HSP 90-alpha/0.583
2wepADPATP-dependent molecular chaperone HSP82/0.579
4fcr0TMHeat shock protein HSP 90-alpha/0.579
3rlq3RQHeat shock protein HSP 90-alpha/0.578
3t1kANPHeat shock protein HSP 90-alpha/0.575
4asf62UATP-dependent molecular chaperone HSP82/0.574
4egiB2JHeat shock protein HSP 90-alpha/0.574
4xcjADPHeat shock cognate 90 kDa protein/0.572
2byi2DDHeat shock protein HSP 90-alpha/0.571
3r4nFU5Heat shock protein HSP 90-alpha/0.570
1qy8RDIEndoplasmin/0.568
3r4oFU3Heat shock protein HSP 90-alpha/0.568
3rlr3RRHeat shock protein HSP 90-alpha/0.567
1u0yPA7Endoplasmin/0.566
2xabVHDHeat shock protein HSP 90-alpha/0.566
2byh2D7Heat shock protein HSP 90-alpha/0.565
3t10ACPHeat shock protein HSP 90-alpha/0.565
3k974CDHeat shock protein HSP 90-alpha/0.564
1bgqRDCATP-dependent molecular chaperone HSP82/0.563
2werRDCATP-dependent molecular chaperone HSP82/0.562
2exlGDMEndoplasmin/0.560
4ipeANPTNF receptor-associated protein 1/0.559
2fxsRDAATP-dependent molecular chaperone HSP82/0.556
3k981RCHeat shock protein HSP 90-alpha/0.556
1yc14BCHeat shock protein HSP 90-alpha/0.555
4gqtADPHeat shock protein 90/0.555
1uy7PU4Heat shock protein HSP 90-alpha/0.553
1yc443PHeat shock protein HSP 90-alpha/0.553
3t2sAGSHeat shock protein HSP 90-alpha/0.553
4ce3L4VATP-dependent molecular chaperone HSP82/0.553
2wi6ZZ6Heat shock protein HSP 90-alpha/0.552
3hekBD0Heat shock protein HSP 90-alpha/0.549
2iwsNP4ATP-dependent molecular chaperone HSP82/0.546
1uymPU3Heat shock protein HSP 90-beta/0.545
2xx213CATP-dependent molecular chaperone HSP82/0.544
3whaWHAHeat shock protein HSP 90-alpha/0.544
2xcmADPCytosolic heat shock protein 90/0.543
1y4sADPChaperone protein HtpG/0.542
4xdmGDMHeat shock cognate 90 kDa protein/0.542
2fwyH64Heat shock protein HSP 90-alpha/0.539
3d0bSNXHeat shock protein HSP 90-alpha/0.539
4jqlVJ6Heat shock protein HSP 90-alpha/0.539
2xhrC0PHeat shock protein HSP 90-alpha/0.538
3hyz42CHeat shock protein HSP 90-alpha/0.537
4nh82LCHeat shock protein HSP 90-alpha/0.537
5f5rANPHeat shock protein 75 kDa, mitochondrial/0.536
1uyePU9Heat shock protein HSP 90-alpha/0.535
4asg814ATP-dependent molecular chaperone HSP82/0.535
2qfoA13Heat shock protein HSP 90-alpha/0.533
1uy8PU5Heat shock protein HSP 90-alpha/0.532
4efuEFUHeat shock protein HSP 90-alpha/0.532
1uykPUXHeat shock protein HSP 90-alpha/0.530
2gqpPA7Endoplasmin/0.530
2wi72KLHeat shock protein HSP 90-alpha/0.530
1yetGDMHeat shock protein HSP 90-alpha/0.529
3iedAN2HSP90/0.529
4xc0ACPHeat shock cognate 90 kDa protein/0.526
1qy5NECEndoplasmin/0.525
4b7p9UNHeat shock protein HSP 90-alpha/0.525
2hchN5AEndoplasmin/0.524
2vw5BC6ATP-dependent molecular chaperone HSP82/0.523
3c11GDMATP-dependent molecular chaperone HSP82/0.523
3o0iP54Heat shock protein HSP 90-alpha/0.523
3ft8MOJHeat shock protein HSP 90-alpha/0.521
1uyfPU1Heat shock protein HSP 90-alpha/0.519
3b28B2XHeat shock protein HSP 90-alpha/0.518
2yee2ECHeat shock protein HSP 90-alpha/0.517
4egkRDCHeat shock protein HSP 90-alpha/0.515
3hz5Z64Heat shock protein HSP 90-alpha/0.512
1uydPU8Heat shock protein HSP 90-alpha/0.511
2yefANPHeat shock protein HSP 90-alpha/0.510
3omuIBDHeat shock protein 83/0.509
2gfdRDAEndoplasmin/0.506
2xx413IATP-dependent molecular chaperone HSP82/0.506
2hg1N5OEndoplasmin/0.505
2xjjL81Heat shock protein HSP 90-alpha/0.505
3t0zATPHeat shock protein HSP 90-alpha/0.505
3k99PFTHeat shock protein HSP 90-alpha/0.503
1uy9PU6Heat shock protein HSP 90-alpha/0.502
2fwzH71Heat shock protein HSP 90-alpha/0.502
1byqADPHeat shock protein HSP 90-alpha/0.501
1uy6PU3Heat shock protein HSP 90-alpha/0.500
2fypRDEEndoplasmin/0.500
2ykjYKJHeat shock protein HSP 90-alpha/0.499
2xhtC0YHeat shock protein HSP 90-alpha/0.497
2wi4ZZ4Heat shock protein HSP 90-alpha/0.496
3pehIBDEndoplasmin homolog, putative/0.496
4xclAGSHeat shock cognate 90 kDa protein/0.495
3o6o94MHeat shock protein 83/0.494
2iorADPChaperone protein HtpG/0.493
2qg2A91Heat shock protein HSP 90-alpha/0.493
2yi5YI5Heat shock protein HSP 90-alpha/0.491
2qfoA51Heat shock protein HSP 90-alpha/0.489
2xjxXJXHeat shock protein HSP 90-alpha/0.489
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.484
2esaGDMEndoplasmin/0.484
3ekoPYUHeat shock protein HSP 90-alpha/0.483
1uyiPUZHeat shock protein HSP 90-alpha/0.481
4uymVOR14-alpha sterol demethylase Cyp51B/0.481
3inxJZCHeat shock protein HSP 90-alpha/0.479
1yt0ADPEndoplasmin/0.477
2o1vADPEndoplasmin/0.476
3hz142CHeat shock protein HSP 90-alpha/0.476
2h55DZ8Heat shock protein HSP 90-alpha/0.475
3opdHIEHeat shock protein 83/0.475
2bfrADP[Protein ADP-ribosylglutamate] hydrolase AF_15213.2.20.473
2o1uANPEndoplasmin/0.472
2wi5ZZ5Heat shock protein HSP 90-alpha/0.472
3pejBC2Endoplasmin homolog, putative/0.472
4c3f7KWTyrosine-protein kinase Lck2.7.10.20.472
2uwd2GGHeat shock protein HSP 90-alpha/0.470
2yejZZ3Heat shock protein HSP 90-alpha/0.470
1w6hTITPlasmepsin-23.4.23.390.469
2vwcBC2ATP-dependent molecular chaperone HSP82/0.469
4ia3BIVVitamin D3 receptor A/0.469
2vcj2EQHeat shock protein HSP 90-alpha/0.466
1bwsNDPGDP-L-fucose synthase/0.463
2wi1ZZ2Heat shock protein HSP 90-alpha/0.463
4bqg50QHeat shock protein HSP 90-alpha/0.461
2brbPFQSerine/threonine-protein kinase Chk12.7.11.10.460
5e8ySTUTGF-beta receptor type-22.7.11.300.460
2w9sTOPDihydrofolate reductase type 1 from Tn40031.5.1.30.459
2bu9HFVIsopenicillin N synthase1.21.3.10.458
2hcdBIVVitamin D3 receptor A/0.458
2ykbYKBHeat shock protein HSP 90-alpha/0.458
4ia7BIVVitamin D3 receptor A/0.458
1b6kPI5Gag-Pol polyprotein3.4.23.160.457
1uyhPU0Heat shock protein HSP 90-alpha/0.457
2bu8ADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial2.7.11.20.457
2qak1UNGag-Pol polyprotein3.4.23.160.457
3d2rADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial2.7.11.20.457
3inwJZBHeat shock protein HSP 90-alpha/0.457
1xe55FEPlasmepsin-23.4.23.390.456
1d4aFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.455
2qhyMZ1Gag-Pol polyprotein/0.455
3pt6SAHDNA (cytosine-5)-methyltransferase 12.1.1.370.455
4hbm0Y7E3 ubiquitin-protein ligase Mdm26.3.20.455
1proA88Gag-Pol polyprotein/0.454
2q61SF1Peroxisome proliferator-activated receptor gamma/0.454
3ha5SFGHydroxymycolate synthase MmaA42.1.10.454
3rukAERSteroid 17-alpha-hydroxylase/17,20 lyase/0.454
3cylVITBasic phospholipase A2 homolog piratoxin-2/0.453
4f650S9Fibroblast growth factor receptor 1/0.453
4ft7H3KSerine/threonine-protein kinase Chk12.7.11.10.453
4ivgANPTNF receptor-associated protein 1/0.453
1h69FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.452
1ohr1UNV-1 PROTEASE protein/0.452
1hvlA76Gag-Pol polyprotein/0.451
1qnfFADDeoxyribodipyrimidine photo-lyase4.1.99.30.451
2q9fC3SCholesterol 24-hydroxylase/0.451
3h3t16HCollagen type IV alpha-3-binding protein/0.451
3vsoEK1Peroxisome proliferator-activated receptor gamma/0.451
1d4lPI9Gag-Pol polyprotein3.4.23.160.450
3mdvCL6Cholesterol 24-hydroxylase/0.450
3mnrSD1Heat shock protein HSP 90-alpha/0.450
3s56ROCProtease/0.450
4jazSTLPeroxisome proliferator-activated receptor gamma/0.450
1meuDMPGag-Pol polyprotein3.4.23.160.449
3bvb017Gag-Pol polyprotein3.4.23.160.449
4b99R4LMitogen-activated protein kinase 72.7.11.240.449
4bidIE8Mitogen-activated protein kinase kinase kinase 52.7.11.250.449
1hdrNADDihydropteridine reductase1.5.1.340.448
2cchATPCyclin-dependent kinase 22.7.11.220.448
2f3kRO1Protease/0.448
2f7x4EAcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.448
2po7CHDFerrochelatase, mitochondrial4.99.1.10.448
2qd4CHDFerrochelatase, mitochondrial4.99.1.10.448
2wi2ZZ3Heat shock protein HSP 90-alpha/0.448
2zdyADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial2.7.11.20.448
4r1fADPDNA topoisomerase 2-alpha5.99.1.30.448
1kzjCB3Thymidylate synthase/0.447
2r43G3GGag-Pol polyprotein3.4.23.160.447
2w6qOA5Biotin carboxylase6.3.4.140.447
3frqERYErythromycin resistance repressor protein/0.447
1ida0POGag-Pol polyprotein3.4.23.470.446
2xa4AZ5Tyrosine-protein kinase JAK2/0.446
3ekx1UNGag-Pol polyprotein3.4.23.160.446
4awo99BHeat shock protein HSP 90-alpha/0.446
1bygSTUTyrosine-protein kinase CSK/0.445
1hihC20Gag-Pol polyprotein/0.445
2dteNAIGlucose 1-dehydrogenase related protein/0.445
2e9uA25Serine/threonine-protein kinase Chk12.7.11.10.445
2lbaCHOFatty acid binding protein 6/0.445
2qhcAB1Protease/0.445
4aqc88ATyrosine-protein kinase JAK2/0.445
4j03FVSBifunctional epoxide hydrolase 23.1.3.760.445
4r21STRCytochrome P450 family 17 polypeptide 2/0.445
4xumIMNPeroxisome proliferator-activated receptor gamma/0.445
2bsmBSMHeat shock protein HSP 90-alpha/0.444
2xhxT5MHeat shock protein HSP 90-alpha/0.444
2yeiXQIHeat shock protein HSP 90-alpha/0.444
3ggxGGXGag-Pol polyprotein/0.444
4yzcSTUSerine/threonine-protein kinase/endoribonuclease IRE12.7.11.10.444
1hosPHPGag-Pol polyprotein/0.443
1i5cADPChemotaxis protein CheA2.7.13.30.443
1nvqUCNSerine/threonine-protein kinase Chk12.7.11.10.443
1uycPU7Heat shock protein HSP 90-alpha/0.443
2e0aANP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial2.7.11.20.443
2r38G4GGag-Pol polyprotein3.4.23.160.443
3gu83GUDeath-associated protein kinase 12.7.11.10.443
1nhhANPDNA mismatch repair protein MutL/0.442
1xl2189Gag-Pol polyprotein3.4.23.160.442
2nrySTUInterleukin-1 receptor-associated kinase 42.7.11.10.442
3c0i3AMPeripheral plasma membrane protein CASK2.7.11.10.442
3rlp3RPHeat shock protein HSP 90-alpha/0.442
4awp99AHeat shock protein HSP 90-alpha/0.442
4g7gVFVLanosterol 14-alpha-demethylase/0.442
4ic7ANPMitogen-activated protein kinase 72.7.11.240.442
4l9q9TPSerum albumin/0.442
5a4kFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.442
1h66FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.441
1i58ADPChemotaxis protein CheA2.7.13.30.441
1i59ANPChemotaxis protein CheA2.7.13.30.441
2qi0MZ3Gag-Pol polyprotein/0.441
2vci2GJHeat shock protein HSP 90-alpha/0.441
3c15FOKAdenylate cyclase type 2/0.441
3c15FOKAdenylate cyclase type 5/0.441
3lzu017Gag-Pol polyprotein3.4.23.160.441
3qihNI7Gag-Pol polyprotein3.4.23.160.441
3s54017Protease/0.441
3ut5LOCTubulin beta chain/0.441
4anx534Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.441
4djpM73Pol polyprotein/0.441
5e8wSTUTGF-beta receptor type-12.7.11.300.441
2w0bCMWLanosterol 14-alpha demethylase1.14.13.700.440
3so9017Pol protein/0.440
4fv7E94Mitogen-activated protein kinase 12.7.11.240.440
4gk2L66Ephrin type-A receptor 32.7.10.10.440
4jia1K3Tyrosine-protein kinase JAK2/0.440