2.800 Å
X-ray
2013-04-10
Name: | Mitogen-activated protein kinase kinase kinase 5 |
---|---|
ID: | M3K5_HUMAN |
AC: | Q99683 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.7.11.25 |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 70.378 |
---|---|
Number of residues: | 33 |
Including | |
Standard Amino Acids: | 33 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.409 | 864.000 |
% Hydrophobic | % Polar |
---|---|
56.64 | 43.36 |
According to VolSite |
HET Code: | IE8 |
---|---|
Formula: | C24H21N4O2 |
Molecular weight: | 397.449 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 71.76 % |
Polar Surface area: | 91.58 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 3 |
H-Bond Donors: | 2 |
Rings: | 5 |
Aromatic rings: | 5 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-49.4242 | 12.5597 | -7.3576 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C15 | CD1 | LEU- 686 | 3.88 | 0 | Hydrophobic |
C21 | CB | LEU- 686 | 3.93 | 0 | Hydrophobic |
C9 | CG2 | VAL- 694 | 4.05 | 0 | Hydrophobic |
C17 | CG1 | VAL- 694 | 4.26 | 0 | Hydrophobic |
C19 | CG2 | VAL- 694 | 3.78 | 0 | Hydrophobic |
C17 | CB | ALA- 707 | 4.03 | 0 | Hydrophobic |
N2 | O | GLU- 755 | 2.87 | 158.28 | H-Bond (Ligand Donor) |
N3 | N | VAL- 757 | 3.13 | 166.99 | H-Bond (Protein Donor) |
C17 | CD1 | LEU- 810 | 3.47 | 0 | Hydrophobic |
C23 | CD2 | LEU- 810 | 3.46 | 0 | Hydrophobic |
C10 | CB | SER- 821 | 4.08 | 0 | Hydrophobic |
N | OD2 | ASP- 822 | 3.87 | 0 | Ionic (Ligand Cationic) |
C2 | CB | ASP- 822 | 4.42 | 0 | Hydrophobic |