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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3btsNADGalactose/lactose metabolism regulatory protein GAL80

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
3btsNADGalactose/lactose metabolism regulatory protein GAL80/1.000
1xe55FEPlasmepsin-23.4.23.390.505
3adaNADSubunit alpha of sarocosine oxidase/0.499
1tehNADAlcohol dehydrogenase class-31.1.1.10.498
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.493
4ambDUDPutative glycosyl transferase/0.493
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.488
3gqvNAPEnoyl reductase LovC10.487
2gjlFMNNitronate monooxygenase1.13.12.160.485
2ch6ADPN-acetyl-D-glucosamine kinase2.7.1.590.483
1hdcCBO3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase1.1.1.530.481
2givACOHistone acetyltransferase KAT8/0.481
3dgaNDPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.479
2cmjNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.478
4g6gFADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial1.6.5.90.478
1mjaCOAHistone acetyltransferase ESA1/0.476
1xddAAYIntegrin alpha-L/0.476
4ewn0VRImidazole glycerol phosphate synthase subunit HisF4.1.30.476
1p0hACOMycothiol acetyltransferase2.3.1.1890.475
4xguADPPutative pachytene checkpoint protein 2/0.475
1rneC60Renin3.4.23.150.474
1w6hTITPlasmepsin-23.4.23.390.474
1yb5NAPQuinone oxidoreductase1.6.5.50.474
2q2vNADBeta-D-hydroxybutyrate dehydrogenase/0.474
3gw9VNILanosterol 14-alpha-demethylase/0.474
3hl0NADMaleylacetate reductase/0.474
3oibFDAPutative acyl-CoA dehydrogenase/0.474
4dnaFADProbable glutathione reductase/0.474
4oztP1AEcdysone receptor, putative/0.474
1t2cNAIL-lactate dehydrogenase1.1.1.270.473
2f4bEHAPeroxisome proliferator-activated receptor gamma/0.473
3b6zCO7Enoyl reductase LovC10.472
3b70NAPEnoyl reductase LovC10.472
3vqsJT1Genome polyprotein/0.471
5kjcNAJAlcohol dehydrogenase E chain1.1.1.10.471
2a92NAIL-lactate dehydrogenase/0.470
2a94AP0L-lactate dehydrogenase1.1.1.270.470
2gjnFMNNitronate monooxygenase1.13.12.160.470
4kl9NDPDihydrofolate reductase1.5.1.30.469
3iqhTYR_ASP_ILECysteine synthase2.5.1.470.468
1gqtACPRibokinase/0.467
2q5g1FAPeroxisome proliferator-activated receptor delta/0.467
3mpjFADGlutaryl-CoA dehydrogenase1.3.99.320.467
3r7kFDAProbable acyl CoA dehydrogenase/0.467
1fm4DXCMajor pollen allergen Bet v 1-L/0.466
1jioDEB6-deoxyerythronolide B hydroxylase/0.466
4gavFADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial1.6.5.90.466
4gdy0X1Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.466
1me6IVSPlasmepsin-23.4.23.390.465
3zbrNAP2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.465
4ipw1G7Mycocyclosin synthase1.14.21.90.465
4jx1CAHCamphor 5-monooxygenase1.14.15.10.465
4q73FADBifunctional protein PutA/0.465
1egeFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.464
1yqxNAPSinapyl alcohol dehydrogenase/0.464
2xhd7T9Glutamate receptor 2/0.464
3uylTYDProbable NDP-rhamnosyltransferase/0.464
4exg916Beta-secretase 13.4.23.460.464
4q71FADBifunctional protein PutA/0.464
5b1yNDP3-oxoacyl-[acyl-carrier-protein] reductase/0.464
1drhNAPDihydrofolate reductase1.5.1.30.463
2wyvNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.463
3tjzGNPADP-ribosylation factor 1/0.463
4bgePYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.463
4dplNAPMalonyl-CoA reductase1.2.1.750.463
4gxs0YSGlutamate receptor 2/0.463
4uwmFMN3,6-diketocamphane 1,6 monooxygenase1.14.130.463
1jkx138Phosphoribosylglycinamide formyltransferase/0.462
3ad9NADSubunit alpha of sarocosine oxidase/0.462
3lpkZ76Beta-secretase 13.4.23.460.462
3r83Z14Cyclin-dependent kinase 22.7.11.220.462
4a84DXCMajor pollen allergen Bet v 1-A/0.462
4dl9NADS-(hydroxymethyl)glutathione dehydrogenase/0.462
4nbwNADShort-chain dehydrogenase/reductase SDR/0.462
4nd3NADLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase/0.462
1osvCHCBile acid receptor/0.461
1xe65FPPlasmepsin-23.4.23.390.461
3jv7NADSecondary alcohol dehydrogenase/0.461
3kjsNAPBifunctional dihydrofolate reductase-thymidylate synthase/0.461
4d89BXDBeta-secretase 13.4.23.460.461
1fy7COAHistone acetyltransferase ESA1/0.460
2he5NDPAldo-keto reductase family 1 member C211.1.10.460
2po7CHDFerrochelatase, mitochondrial4.99.1.10.460
3in6FMNUncharacterized protein/0.460
3phiNDPShikimate dehydrogenase (NADP(+))/0.460
3r6sCMPCRP-like cAMP-activated global transcriptional regulator/0.460
4q72FADBifunctional protein PutA/0.460
1rx0FADIsobutyryl-CoA dehydrogenase, mitochondrial1.3.990.459
2c29NAPDihydroflavonol 4-reductase/0.459
2gr1FADFerredoxin reductase/0.459
2zatNAPDehydrogenase/reductase SDR family member 41.1.1.1840.459
3qlsNDPDihydrofolate reductase1.5.1.30.459
4bgiI4IEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.459
4g7gVFVLanosterol 14-alpha-demethylase/0.459
5kj6NAJAlcohol dehydrogenase E chain1.1.1.10.459
2fr0NDP6-deoxyerythronolide-B synthase EryA1, modules 1 and 2/0.458
2gmhFADElectron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial1.5.5.10.458
2ozuACOHistone acetyltransferase KAT6A/0.458
2uzfCAA1,4-dihydroxy-2-naphthoyl-CoA synthase/0.458
3kpkFADSulfide-quinone reductase/0.458
4a83DXCMajor pollen allergen Bet v 1-A/0.458
4b4vL34Bifunctional protein FolD/0.458
4dxhNAJAlcohol dehydrogenase E chain1.1.1.10.458
4fd2ADPChaperone protein ClpB/0.458
4g9kFADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial1.6.5.90.458
4irnFADAnaB/0.458
1g1aNADdTDP-glucose 4,6-dehydratase/0.457
1qorNDPQuinone oxidoreductase 1/0.457
1rwbNADGlucose 1-dehydrogenase1.1.1.470.457
2oo5TXDNAD(P) transhydrogenase subunit alpha part 11.6.1.20.457
2xc3RT8Steroid C26-monooxygenase1.14.13.1410.457
3owaFADAcyl-CoA dehydrogenase/0.457
3pm9FADPutative oxidoreductase/0.457
4trnNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.457
5dqrFAD7-hydroxymethyl chlorophyll a reductase, chloroplastic1.17.7.20.457
2i4qUA4Renin3.4.23.150.456
2q4bNAPUncharacterized protein At5g02240/0.456
3iocA5DPantothenate synthetase6.3.2.10.456
3lqfNADGalactitol dehydrogenase/0.456
4jqh1MFAlr2278 protein/0.456
4nd2A3DLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase/0.456
4nfsNAJAlcohol dehydrogenase E chain1.1.1.10.456
4xd2NAIAlcohol dehydrogenase E chain1.1.1.10.456
5dp2NAPCurF/0.456
5jscFADPutative acyl-CoA dehydrogenase/0.456
1e3eNAIAlcohol dehydrogenase 41.1.1.10.455
1rx1NAPDihydrofolate reductase1.5.1.30.455
2f7x4EAcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.455
3b20NADGlyceraldehyde-3-phosphate dehydrogenase/0.455
3i59N6RCRP-like cAMP-activated global transcriptional regulator/0.455
3ictFADCoenzyme A disulfide reductase/0.455
4f4dCHDFerrochelatase, mitochondrial4.99.1.10.455
4kzoNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.455
4rf2NAPNADPH dependent R-specific alcohol dehydrogenase/0.455
4zjuNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.455
1xq6NAPUncharacterized protein At5g02240/0.454
2hunNAD336aa long hypothetical dTDP-glucose 4,6-dehydratase/0.454
3g70A5TRenin3.4.23.150.454
3zuyTCHTransporter/0.454
1bxkNADdTDP-glucose 4,6-dehydratase 2/0.453
1qlhNADAlcohol dehydrogenase E chain1.1.1.10.453
1tytFADTrypanothione reductase1.8.1.120.453
1ykfNAPNADP-dependent isopropanol dehydrogenase1.1.1.800.453
3q33ACOHistone acetyltransferase RTT1092.3.1.480.453
3uozFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.453
1bil0IURenin3.4.23.150.452
1h69FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.452
1heuNADAlcohol dehydrogenase E chain1.1.1.10.452
1nhpFADNADH peroxidase1.11.1.10.452
1pqc444Oxysterols receptor LXR-beta/0.452
2fy4COACholine O-acetyltransferase2.3.1.60.452
2p83MR0Beta-secretase 13.4.23.460.452
2zu8GDDMannosyl-3-phosphoglycerate synthase2.4.1.2170.452
3lsiFADPyranose 2-oxidase/0.452
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.452
1t0lNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.451
2cmvNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.451
2h9iEADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.451
2ikuLIYRenin3.4.23.150.451
2jkvNAP6-phosphogluconate dehydrogenase, decarboxylating1.1.1.440.451
2y0mACOHistone acetyltransferase KAT8/0.451
2y3rTRKTamL/0.451
3cz7ACOHistone acetyltransferase RTT1092.3.1.480.451
3h86AP5Adenylate kinase/0.451
3ohf3HFBeta-secretase 13.4.23.460.451
1typFADTrypanothione reductase1.8.1.120.450
2cig1DGDihydrofolate reductase1.5.1.30.450
2jamJ60Calcium/calmodulin-dependent protein kinase type 1G2.7.11.170.450
3ag6PAJPantothenate synthetase/0.450
3etdNDPGlutamate dehydrogenase 1, mitochondrial1.4.1.30.450
3g49NAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.450
3k5dXLIBeta-secretase 13.4.23.460.450
3nxxNDPDihydrofolate reductase1.5.1.30.450
4aosFADSteroid monooxygenase/0.450
4eakATP5'-AMP-activated protein kinase subunit gamma-1/0.450
4hbm0Y7E3 ubiquitin-protein ligase Mdm26.3.20.450
5idwNAPShort-chain dehydrogenase/reductase SDR/0.450
1ai9NDPDihydrofolate reductase1.5.1.30.449
1j3jNDPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.449
1p0fNAPNADP-dependent alcohol dehydrogenase1.1.1.20.449
2bfoNDPPteridine reductase 11.5.1.330.449
2bi4NADLactaldehyde reductase1.1.1.770.449
2g226IGRenin3.4.23.150.449
2iko7IGRenin3.4.23.150.449
2iviACWIsopenicillin N synthase1.21.3.10.449
3i59N6SCRP-like cAMP-activated global transcriptional regulator/0.449
3lpiZ74Beta-secretase 13.4.23.460.449
3toxNAPPutative oxidoreductase/0.449
4fse0VABeta-secretase 13.4.23.460.449
4ktl1CQCytochrome P450/0.449
5jjsSAHGenome polyprotein/0.449
1cydNDPCarbonyl reductase [NADPH] 21.1.1.1840.448
1gcoNADGlucose 1-dehydrogenase1.1.1.470.448
1h73ANPHomoserine kinase2.7.1.390.448
1mjbACOHistone acetyltransferase ESA1/0.448
1mp0NADAlcohol dehydrogenase class-31.1.1.10.448
2d1yNADOxidoreductase, short-chain dehydrogenase/reductase family/0.448
3d8bADPFidgetin-like protein 13.6.40.448
3w8dNAD3-hydroxybutyrate dehydrogenase/0.448
4b7xNAPProbable oxidoreductase/0.448
4bb3KKAIsopenicillin N synthase1.21.3.10.448
4cvmANPUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase/0.448
4m83ERYOleandomycin glycosyltransferase2.4.10.448
5af7FADAcyl-CoA dehydrogenase/0.448
5cdgNAJAlcohol dehydrogenase E chain1.1.1.10.448
5dbgNADIridoid synthase1.3.1.990.448
5jsfNAD17-beta-hydroxysteroid dehydrogenase 141.1.10.448
1mgoNADAlcohol dehydrogenase E chain1.1.1.10.447
1tj0FADBifunctional protein PutA1.5.5.20.447
1xs7MMIBeta-secretase 13.4.23.460.447
2rbeNDPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.447
2xaaNADSecondary alcohol dehydrogenase/0.447
2ztlNADD(-)-3-hydroxybutyrate dehydrogenase/0.447
3kjrNAPBifunctional dihydrofolate reductase-thymidylate synthase/0.447
3m6iNADL-arabinitol 4-dehydrogenase1.1.1.120.447
3sp6IL2Peroxisome proliferator-activated receptor alpha/0.447
4bbyFADAlkyldihydroxyacetonephosphate synthase, peroxisomal2.5.1.260.447
1kboFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.446
1ma0NADAlcohol dehydrogenase class-31.1.1.10.446
1zdwFLVPrenyltransferase/0.446
2jk6FADTrypanothione reductase/0.446
3iqiASN_GLU_ASN_ILECysteine synthase2.5.1.470.446
3isjA8DPantothenate synthetase6.3.2.10.446
3kb1ADPIron-sulfur cluster carrier protein/0.446
3te5NAI5'-AMP-activated protein kinase subunit gamma/0.446
3vdqNAD3-hydroxybutyrate dehydrogenase/0.446
4fw8NAI3-oxoacyl-(Acyl-carrier-protein) reductase/0.446
4kcfAKMFAD-dependent oxidoreductase/0.446
4udrFAD5-(hydroxymethyl)furfural oxidase/0.446
1bk0ACVIsopenicillin N synthase1.21.3.10.445
1i7gAZ2Peroxisome proliferator-activated receptor alpha/0.445
1y7lASN_LEU_ASN_ILECysteine synthase2.5.1.470.445
2b53D23Cyclin-dependent kinase 22.7.11.220.445
2ebaFADPutative glutaryl-CoA dehydrogenase/0.445
2fn7NADLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase/0.445
3ijoB4DGlutamate receptor 2/0.445
3lu1NADUDP-N-acetylglucosamine 4-epimerase/0.445
3qgf46FGenome polyprotein2.7.7.480.445
3r95ACOMccE protein/0.445
4bc7FADAlkyldihydroxyacetonephosphate synthase, peroxisomal2.5.1.260.445
4c4oNADSADH/0.445
4oaqNDPR-specific carbonyl reductase/0.445
5fl3ADPPili retraction protein PilT/0.445
5hbrCOAAcyl-CoA synthetase (NDP forming)/0.445
1febFADTrypanothione reductase1.8.1.120.444
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.444
2a84ATPPantothenate synthetase6.3.2.10.444
2ggsNDPdTDP-4-dehydrorhamnose reductase/0.444
2h3wCOACarnitine O-acetyltransferase2.3.1.70.444
2qo5CHDFatty acid-binding protein 10-A, liver basic/0.444
2rlcCHDCholoylglycine hydrolase3.5.1.240.444
2vbdV10Isopenicillin N synthase1.21.3.10.444
2y3sTIRTamL/0.444
3cid318Beta-secretase 13.4.23.460.444
3ctyFADProbable thioredoxin reductase/0.444
3d84NDPDihydrofolate reductase1.5.1.30.444
3eksCY9Actin-5C/0.444
3em0CHDFatty acid-binding protein 6, ileal (gastrotropin)/0.444
3flkNAITartrate dehydrogenase/decarboxylase1.1.1.930.444
3lzs017Gag-Pol polyprotein3.4.23.160.444
3mpiFADGlutaryl-CoA dehydrogenase1.3.99.320.444
4b1rITCTetracycline repressor protein class D/0.444
4iae1DXAlr2278 protein/0.444
4rvuNDPProbable quinone reductase Qor (NADPH:quinone reductase) (Zeta-crystallin homolog protein)/0.444
5dozNDPJamJ/0.444
1yqdNAPSinapyl alcohol dehydrogenase/0.443
2ahrNAPPyrroline-5-carboxylate reductase/0.443
2fzwNADAlcohol dehydrogenase class-31.1.1.10.443
2npaMMBPeroxisome proliferator-activated receptor alpha/0.443
2uxuNARHTH-type transcriptional regulator TtgR/0.443
2zb3NDPProstaglandin reductase 21.3.1.480.443
3fcjFADNitroalkane oxidase1.7.3.10.443
3k4nFADPyranose 2-oxidase/0.443
3k5fAYHBeta-secretase 13.4.23.460.443
3oq6NAJAlcohol dehydrogenase E chain1.1.1.10.443
4h4vFADBiphenyl dioxygenase ferredoxin reductase subunit/0.443
4h4zFADBiphenyl dioxygenase ferredoxin reductase subunit/0.443
1h6vFADThioredoxin reductase 1, cytoplasmic1.8.1.90.442
1mj9COAHistone acetyltransferase ESA1/0.442
1nboNADGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.442
1oc1ASVIsopenicillin N synthase1.21.3.10.442
2bu9HFVIsopenicillin N synthase1.21.3.10.442
2c27ACOMycothiol acetyltransferase2.3.1.1890.442
2ddoATPPyridoxine/pyridoxal/pyridoxamine kinase/0.442
2hdhNADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.442
2hrcCHDFerrochelatase, mitochondrial4.99.1.10.442
2yvgNADFerredoxin reductase/0.442
2ztmNADD(-)-3-hydroxybutyrate dehydrogenase/0.442
3cic316Beta-secretase 13.4.23.460.442
3clbNAPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.442
3hwrNDP2-dehydropantoate 2-reductase/0.442
3ohh3HHBeta-secretase 13.4.23.460.442
3to6LYS_CMCHistone acetyltransferase ESA1/0.442
4anx534Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.442
4eagATP5'-AMP-activated protein kinase subunit gamma-1/0.442
4k6mSAHGenome polyprotein/0.442
5cdtNAJAlcohol dehydrogenase E chain1.1.1.10.442
5jlaNADPutative short-chain dehydrogenase/reductase/0.442
1dirNADDihydropteridine reductase1.5.1.340.441
1egdFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.441
1lbcCYZGlutamate receptor 2/0.441
2c1bCQPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.441
2gqwFADFerredoxin reductase/0.441
2jb4A14Isopenicillin N synthase1.21.3.10.441
2p8uCOAHydroxymethylglutaryl-CoA synthase, cytoplasmic2.3.3.100.441
2znnS44Peroxisome proliferator-activated receptor alpha/0.441
3eanFADThioredoxin reductase 1, cytoplasmic1.8.1.90.441
3k5c0BIBeta-secretase 13.4.23.460.441
3p4tFAOPutative acyl-CoA dehydrogenase/0.441
3qwbNDPProbable quinone oxidoreductase1.6.5.50.441
3syiFADSulfide-quinone reductase/0.441
3vweCOAAlpha-tubulin N-acetyltransferase 1/0.441
4bfvZVVPantothenate kinase2.7.1.330.441
4o1mNADEnoyl-acyl carrier reductase/0.441
4p53NAI2-epi-5-epi-valiolone synthase/0.441
4wzhFMNDihydroorotate dehydrogenase (fumarate)/0.441
1dhrNADDihydropteridine reductase1.5.1.340.440
1ia1NDPDihydrofolate reductase1.5.1.30.440
1kevNDPNADP-dependent isopropanol dehydrogenase1.1.1.800.440
1nhqFADNADH peroxidase1.11.1.10.440
1nytNAPShikimate dehydrogenase (NADP(+))/0.440
2ft9CHDFatty acid-binding protein 2, liver/0.440
2ql6ADPNicotinamide riboside kinase 1/0.440
2x7hPFNProstaglandin reductase 310.440
3kry3KRCollagenase 33.4.240.440
3oagLPQRenin3.4.23.150.440
3oqfS51Renin3.4.23.150.440
3qlrNDPDihydrofolate reductase1.5.1.30.440
3wagTYDGlycosyltransferase/0.440
4dpwAGSMevalonate diphosphate decarboxylase/0.440
4mdhNADMalate dehydrogenase, cytoplasmic1.1.1.370.440
4rquNADAlcohol dehydrogenase class-P/0.440
5ez7FADProbable FAD-dependent oxidoreductase PA4991/0.440
5kjfNAJAlcohol dehydrogenase E chain1.1.1.10.440