3.000 Å
X-ray
2012-05-25
| Name: | Chaperone protein ClpB |
|---|---|
| ID: | CLPB_THET8 |
| AC: | Q9RA63 |
| Organism: | Thermus thermophilus |
| Reign: | Bacteria |
| TaxID: | 300852 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 83.334 |
|---|---|
| Number of residues: | 28 |
| Including | |
| Standard Amino Acids: | 28 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.249 | 745.875 |
| % Hydrophobic | % Polar |
|---|---|
| 37.10 | 62.90 |
| According to VolSite | |

| HET Code: | ADP |
|---|---|
| Formula: | C10H12N5O10P2 |
| Molecular weight: | 424.177 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 66.25 % |
| Polar Surface area: | 260.7 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| -41.8874 | 12.028 | 39.3321 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| N1 | N | VAL- 561 | 2.61 | 145.85 | H-Bond (Protein Donor) |
| O3B | N | GLY- 598 | 2.74 | 144.83 | H-Bond (Protein Donor) |
| O2B | N | VAL- 599 | 3.17 | 136.76 | H-Bond (Protein Donor) |
| O1B | OG1 | THR- 602 | 2.81 | 173.04 | H-Bond (Protein Donor) |
| O1A | N | GLU- 603 | 3.01 | 161.32 | H-Bond (Protein Donor) |
| C2' | CG | GLU- 603 | 3.72 | 0 | Hydrophobic |
| C1' | CG2 | ILE- 765 | 3.76 | 0 | Hydrophobic |
| O2' | NE2 | GLN- 769 | 2.56 | 160.88 | H-Bond (Protein Donor) |
| C1' | CB | ALA- 805 | 4.14 | 0 | Hydrophobic |