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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4mfe BTN Pyruvate carboxylase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1n35 CH1RNA-directed RNA polymerase lambda-3 2.7.7.48 0.744
1n38 U3HRNA-directed RNA polymerase lambda-3 2.7.7.48 0.744
1wet GUNHTH-type transcriptional repressor PurR / 0.744
1xxj UNCUricase 1.7.3.3 0.744
2fzk CTPAspartate carbamoyltransferase regulatory chain / 0.744
2oap ANPType II secretion system protein (GspE-2) / 0.744
2z7q ACPRibosomal protein S6 kinase alpha-1 2.7.11.1 0.744
3cwq ADPParA family chromosome partitioning protein / 0.744
3f8p NADNADH oxidase/thioredoxin reductase / 0.744
3f8r NAPNADH oxidase/thioredoxin reductase / 0.744
3fzf ATPHeat shock cognate 71 kDa protein / 0.744
3u9d ATPActin, alpha skeletal muscle / 0.744
3zzn ADPL-lactate dehydrogenase / 0.744
5bnt NAPAspartate-semialdehyde dehydrogenase 1.2.1.11 0.744
4mfe BTNPyruvate carboxylase / 0.735
4h50 NAPBiphenyl dioxygenase ferredoxin reductase subunit / 0.699
1glb ADPGlycerol kinase / 0.698
4loc BTNPyruvate carboxylase / 0.698
1gle ADPGlycerol kinase / 0.693
3fi8 OPECholine kinase / 0.687
4rcv NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.681
1glf ADPGlycerol kinase / 0.677
3tif ADPUncharacterized ABC transporter ATP-binding protein MJ0796 / 0.677
5ero 210Fusicoccadiene synthase 2.5.1.29 0.672
2hry ACPPhosphoribosylformylglycinamidine synthase subunit PurL / 0.669
2eb3 ANPEpidermal growth factor receptor 2.7.10.1 0.668
3ge1 ADPGlycerol kinase / 0.668
4rvn COAPhenylacetate-coenzyme A ligase / 0.667
2opn SUFFarnesyl pyrophosphate synthase 2.5.1.10 0.666
4yvz 3ATDNA integrity scanning protein DisA / 0.663
3eks ATPActin-5C / 0.661
1fp6 ADPNitrogenase iron protein 1 1.18.6.1 0.660
1h48 C5P2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12 0.660
2hs4 ACPPhosphoribosylformylglycinamidine synthase subunit PurL / 0.660
2xtn GTPGTPase IMAP family member 2 / 0.660
3fwy ADPLight-independent protochlorophyllide reductase iron-sulfur ATP-binding protein / 0.660
3kjg ADPCO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC / 0.660
4cdg ADPBloom syndrome protein 3.6.4.12 0.660
4nxv GDPMitochondrial dynamics protein MID51 / 0.660
4o3m ADPBloom syndrome protein 3.6.4.12 0.660
4qml ANPSerine/threonine-protein kinase 24 2.7.11.1 0.660
4h2i A125'-nucleotidase 3.1.3.5 0.659
3ez6 ADPPlasmid partition protein A / 0.657
3rkr NAPUncharacterized protein / 0.657
2ewv ADPTwitching motility protein PilT / 0.653
4br7 AU1Ectonucleoside triphosphate diphosphohydrolase I / 0.653
3u3o 3QVSulfotransferase 1A1 2.8.2.1 0.652
3u4l ATPActin, cytoplasmic 1 / 0.650