2.700 Å
X-ray
2006-07-21
Name: | Phosphoribosylformylglycinamidine synthase subunit PurL |
---|---|
ID: | PURL_THEMA |
AC: | Q9X0X3 |
Organism: | Thermotoga maritima |
Reign: | Bacteria |
TaxID: | 243274 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 33.133 |
---|---|
Number of residues: | 45 |
Including | |
Standard Amino Acids: | 42 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 1 |
Cofactors: | |
Metals: | MG MG |
Ligandability | Volume (Å3) |
---|---|
0.139 | 745.875 |
% Hydrophobic | % Polar |
---|---|
29.86 | 70.14 |
According to VolSite |
HET Code: | ACP |
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Formula: | C11H14N5O12P3 |
Molecular weight: | 501.176 g/mol |
DrugBank ID: | DB03909 |
Buried Surface Area: | 57.17 % |
Polar Surface area: | 310.64 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 16 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
29.0692 | -29.4969 | 133.298 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1A | OH | TYR- 35 | 2.85 | 136.56 | H-Bond (Protein Donor) |
O2B | NZ | LYS- 68 | 3.81 | 0 | Ionic (Protein Cationic) |
N6 | OD1 | ASN- 442 | 3.02 | 123.91 | H-Bond (Ligand Donor) |
N6 | O | ASN- 478 | 3.45 | 127.04 | H-Bond (Ligand Donor) |
O5' | O | HOH- 2257 | 3.09 | 179.97 | H-Bond (Protein Donor) |