sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
2.800 Å
X-ray
2004-11-05
| Name: | Uricase |
|---|---|
| ID: | URIC_ASPFL |
| AC: | Q00511 |
| Organism: | Aspergillus flavus |
| Reign: | Eukaryota |
| TaxID: | 5059 |
| EC Number: | 1.7.3.3 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| C | 40 % |
| D | 60 % |
| B-Factor: | 45.929 |
|---|---|
| Number of residues: | 25 |
| Including | |
| Standard Amino Acids: | 25 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.533 | 803.250 |
| % Hydrophobic | % Polar |
|---|---|
| 36.13 | 63.87 |
| According to VolSite | |
| HET Code: | UNC |
|---|---|
| Formula: | C4H4N4O4 |
| Molecular weight: | 172.099 g/mol |
| DrugBank ID: | DB03099 |
| Buried Surface Area: | 74.32 % |
| Polar Surface area: | 130.04 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 5 |
| H-Bond Donors: | 3 |
| Rings: | 1 |
| Aromatic rings: | 0 |
| Anionic atoms: | 1 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 1 |
| X | Y | Z |
|---|---|---|
| 8.69125 | 48.5937 | -1.96583 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| OD2 | NH1 | ARG- 176 | 3.06 | 123.68 | H-Bond (Protein Donor) |
| O2 | NH2 | ARG- 176 | 2.78 | 151.73 | H-Bond (Protein Donor) |
| O2 | N | VAL- 227 | 2.96 | 169.17 | H-Bond (Protein Donor) |
| O6 | NE2 | GLN- 228 | 2.96 | 142.68 | H-Bond (Protein Donor) |
| N1 | OE1 | GLN- 228 | 3.43 | 152.93 | H-Bond (Ligand Donor) |
