2.800 Å
X-ray
2002-10-25
Name: | RNA-directed RNA polymerase lambda-3 |
---|---|
ID: | RDRP_REOVD |
AC: | P0CK31 |
Organism: | Reovirus type 3 |
Reign: | Viruses |
TaxID: | 10886 |
EC Number: | 2.7.7.48 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 27.880 |
---|---|
Number of residues: | 30 |
Including | |
Standard Amino Acids: | 27 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 1 |
Cofactors: | |
Metals: | MN MN |
Ligandability | Volume (Å3) |
---|---|
0.594 | 1613.250 |
% Hydrophobic | % Polar |
---|---|
26.57 | 73.43 |
According to VolSite |
HET Code: | U3H |
---|---|
Formula: | C9H14N2O14P3 |
Molecular weight: | 467.134 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 37.49 % |
Polar Surface area: | 283.79 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 4 |
Rings: | 2 |
Aromatic rings: | 0 |
Anionic atoms: | 4 |
Cationic atoms: | 1 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
-7.8875 | 93.7069 | 17.0717 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1B | NH2 | ARG- 523 | 2.76 | 145.41 | H-Bond (Protein Donor) |
O3B | NE | ARG- 523 | 3.39 | 135.55 | H-Bond (Protein Donor) |
O1B | CZ | ARG- 523 | 3.85 | 0 | Ionic (Protein Cationic) |
O1B | NH2 | ARG- 524 | 3.09 | 128.89 | H-Bond (Protein Donor) |
O2' | OD2 | ASP- 590 | 3.31 | 145.83 | H-Bond (Ligand Donor) |
O2B | MN | MN- 1301 | 2.14 | 0 | Metal Acceptor |
O1A | MN | MN- 1302 | 2.27 | 0 | Metal Acceptor |