1.800 Å
X-ray
2013-06-04
Name: | Ectonucleoside triphosphate diphosphohydrolase I |
---|---|
ID: | Q5ZUA2_LEGPH |
AC: | Q5ZUA2 |
Organism: | Legionella pneumophila subsp. pneumophila |
Reign: | Bacteria |
TaxID: | 272624 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 27.916 |
---|---|
Number of residues: | 27 |
Including | |
Standard Amino Acids: | 27 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.224 | 705.375 |
% Hydrophobic | % Polar |
---|---|
23.92 | 76.08 |
According to VolSite |
HET Code: | AU1 |
---|---|
Formula: | C10H13N6O9P2 |
Molecular weight: | 423.193 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 43.99 % |
Polar Surface area: | 263.51 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 13 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
33.9223 | 31.267 | 30.2941 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1B | OG1 | THR- 53 | 3.34 | 164.37 | H-Bond (Protein Donor) |
O2B | NZ | LYS- 80 | 3.75 | 0 | Ionic (Protein Cationic) |
O3B | NZ | LYS- 82 | 3.93 | 0 | Ionic (Protein Cationic) |
N3 | NE2 | GLN- 231 | 2.81 | 138.95 | H-Bond (Protein Donor) |
C2' | CZ | TYR- 346 | 3.98 | 0 | Hydrophobic |
N6 | OH | TYR- 350 | 2.92 | 159.52 | H-Bond (Ligand Donor) |