2.800 Å
X-ray
2005-11-07
| Name: | Twitching motility protein PilT |
|---|---|
| ID: | O66950_AQUAE |
| AC: | O66950 |
| Organism: | Aquifex aeolicus |
| Reign: | Bacteria |
| TaxID: | 224324 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 67.120 |
|---|---|
| Number of residues: | 24 |
| Including | |
| Standard Amino Acids: | 24 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.259 | 469.125 |
| % Hydrophobic | % Polar |
|---|---|
| 37.41 | 62.59 |
| According to VolSite | |

| HET Code: | ADP |
|---|---|
| Formula: | C10H12N5O10P2 |
| Molecular weight: | 424.177 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 45.89 % |
| Polar Surface area: | 260.7 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| -5.80141 | 44.004 | 9.0587 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| N6 | O | LEU- 122 | 3.12 | 141.55 | H-Bond (Ligand Donor) |
| O1B | N | GLY- 146 | 3.29 | 141.18 | H-Bond (Protein Donor) |
| O2B | N | SER- 147 | 2.96 | 158.81 | H-Bond (Protein Donor) |
| O1B | NZ | LYS- 149 | 3.75 | 0 | Ionic (Protein Cationic) |
| O2B | NZ | LYS- 149 | 3.53 | 0 | Ionic (Protein Cationic) |
| O2B | N | LYS- 149 | 3.01 | 131.66 | H-Bond (Protein Donor) |
| O3B | N | SER- 150 | 2.94 | 156.07 | H-Bond (Protein Donor) |
| O3B | OG | SER- 150 | 2.7 | 142.2 | H-Bond (Protein Donor) |
| O1A | N | THR- 151 | 3.45 | 167.99 | H-Bond (Protein Donor) |
| C1' | CD1 | LEU- 281 | 4.39 | 0 | Hydrophobic |