2.800 Å
X-ray
2006-07-20
Name: | Phosphoribosylformylglycinamidine synthase subunit PurL |
---|---|
ID: | PURL_THEMA |
AC: | Q9X0X3 |
Organism: | Thermotoga maritima |
Reign: | Bacteria |
TaxID: | 243274 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 22.026 |
---|---|
Number of residues: | 41 |
Including | |
Standard Amino Acids: | 39 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | MG MG |
Ligandability | Volume (Å3) |
---|---|
1.047 | 1191.375 |
% Hydrophobic | % Polar |
---|---|
39.09 | 60.91 |
According to VolSite |
HET Code: | ACP |
---|---|
Formula: | C11H14N5O12P3 |
Molecular weight: | 501.176 g/mol |
DrugBank ID: | DB03909 |
Buried Surface Area: | 57.9 % |
Polar Surface area: | 310.64 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 16 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
55.0449 | -29.6881 | 195.316 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2A | OH | TYR- 35 | 2.57 | 138.59 | H-Bond (Protein Donor) |
C5' | CZ | TYR- 35 | 3.96 | 0 | Hydrophobic |
O1A | NZ | LYS- 68 | 2.72 | 155.2 | H-Bond (Protein Donor) |
O1A | NZ | LYS- 68 | 2.72 | 0 | Ionic (Protein Cationic) |
O3G | N | ALA- 239 | 2.53 | 155.09 | H-Bond (Protein Donor) |
N6 | OD1 | ASN- 442 | 2.96 | 128.46 | H-Bond (Ligand Donor) |
N1 | ND2 | ASN- 442 | 3.27 | 137.78 | H-Bond (Protein Donor) |
O1A | ND2 | ASN- 478 | 2.79 | 145.99 | H-Bond (Protein Donor) |
O2B | MG | MG- 902 | 2.66 | 0 | Metal Acceptor |