2.800 Å
X-ray
2006-07-20
| Name: | Phosphoribosylformylglycinamidine synthase subunit PurL |
|---|---|
| ID: | PURL_THEMA |
| AC: | Q9X0X3 |
| Organism: | Thermotoga maritima |
| Reign: | Bacteria |
| TaxID: | 243274 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 22.026 |
|---|---|
| Number of residues: | 41 |
| Including | |
| Standard Amino Acids: | 39 |
| Non Standard Amino Acids: | 2 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | MG MG |
| Ligandability | Volume (Å3) |
|---|---|
| 1.047 | 1191.375 |
| % Hydrophobic | % Polar |
|---|---|
| 39.09 | 60.91 |
| According to VolSite | |

| HET Code: | ACP |
|---|---|
| Formula: | C11H14N5O12P3 |
| Molecular weight: | 501.176 g/mol |
| DrugBank ID: | DB03909 |
| Buried Surface Area: | 57.9 % |
| Polar Surface area: | 310.64 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 16 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| 55.0449 | -29.6881 | 195.316 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2A | OH | TYR- 35 | 2.57 | 138.59 | H-Bond (Protein Donor) |
| C5' | CZ | TYR- 35 | 3.96 | 0 | Hydrophobic |
| O1A | NZ | LYS- 68 | 2.72 | 155.2 | H-Bond (Protein Donor) |
| O1A | NZ | LYS- 68 | 2.72 | 0 | Ionic (Protein Cationic) |
| O3G | N | ALA- 239 | 2.53 | 155.09 | H-Bond (Protein Donor) |
| N6 | OD1 | ASN- 442 | 2.96 | 128.46 | H-Bond (Ligand Donor) |
| N1 | ND2 | ASN- 442 | 3.27 | 137.78 | H-Bond (Protein Donor) |
| O1A | ND2 | ASN- 478 | 2.79 | 145.99 | H-Bond (Protein Donor) |
| O2B | MG | MG- 902 | 2.66 | 0 | Metal Acceptor |