2.500 Å
X-ray
2002-10-25
Name: | RNA-directed RNA polymerase lambda-3 |
---|---|
ID: | RDRP_REOVD |
AC: | P0CK31 |
Organism: | Reovirus type 3 |
Reign: | Viruses |
TaxID: | 10886 |
EC Number: | 2.7.7.48 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 39.093 |
---|---|
Number of residues: | 30 |
Including | |
Standard Amino Acids: | 27 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 1 |
Cofactors: | |
Metals: | MN MN |
Ligandability | Volume (Å3) |
---|---|
0.149 | 1123.875 |
% Hydrophobic | % Polar |
---|---|
26.43 | 73.57 |
According to VolSite |
HET Code: | CH1 |
---|---|
Formula: | C9H12N3O13P3 |
Molecular weight: | 463.125 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 42.5 % |
Polar Surface area: | 288.71 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 15 |
H-Bond Donors: | 2 |
Rings: | 2 |
Aromatic rings: | 0 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
-7.916 | 92.8671 | 17.0516 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1B | NH2 | ARG- 523 | 3.39 | 130.84 | H-Bond (Protein Donor) |
O3B | NH2 | ARG- 523 | 2.93 | 155.11 | H-Bond (Protein Donor) |
O3B | NE | ARG- 523 | 3.47 | 133.11 | H-Bond (Protein Donor) |
O2G | CZ | ARG- 524 | 3.81 | 0 | Ionic (Protein Cationic) |
O2G | NH1 | ARG- 524 | 2.96 | 144.49 | H-Bond (Protein Donor) |
O2' | OD2 | ASP- 590 | 3.15 | 157.6 | H-Bond (Ligand Donor) |
O2B | MN | MN- 1301 | 2.28 | 0 | Metal Acceptor |
O1A | MN | MN- 1302 | 2.57 | 0 | Metal Acceptor |