2.500 Å
X-ray
2002-10-25
| Name: | RNA-directed RNA polymerase lambda-3 |
|---|---|
| ID: | RDRP_REOVD |
| AC: | P0CK31 |
| Organism: | Reovirus type 3 |
| Reign: | Viruses |
| TaxID: | 10886 |
| EC Number: | 2.7.7.48 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 39.093 |
|---|---|
| Number of residues: | 30 |
| Including | |
| Standard Amino Acids: | 27 |
| Non Standard Amino Acids: | 2 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | MN MN |
| Ligandability | Volume (Å3) |
|---|---|
| 0.149 | 1123.875 |
| % Hydrophobic | % Polar |
|---|---|
| 26.43 | 73.57 |
| According to VolSite | |

| HET Code: | CH1 |
|---|---|
| Formula: | C9H12N3O13P3 |
| Molecular weight: | 463.125 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 42.5 % |
| Polar Surface area: | 288.71 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 15 |
| H-Bond Donors: | 2 |
| Rings: | 2 |
| Aromatic rings: | 0 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| -7.916 | 92.8671 | 17.0516 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O1B | NH2 | ARG- 523 | 3.39 | 130.84 | H-Bond (Protein Donor) |
| O3B | NH2 | ARG- 523 | 2.93 | 155.11 | H-Bond (Protein Donor) |
| O3B | NE | ARG- 523 | 3.47 | 133.11 | H-Bond (Protein Donor) |
| O2G | CZ | ARG- 524 | 3.81 | 0 | Ionic (Protein Cationic) |
| O2G | NH1 | ARG- 524 | 2.96 | 144.49 | H-Bond (Protein Donor) |
| O2' | OD2 | ASP- 590 | 3.15 | 157.6 | H-Bond (Ligand Donor) |
| O2B | MN | MN- 1301 | 2.28 | 0 | Metal Acceptor |
| O1A | MN | MN- 1302 | 2.57 | 0 | Metal Acceptor |