2.290 Å
X-ray
2014-09-17
Name: | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
---|---|
ID: | DXR_MYCTU |
AC: | P9WNS1 |
Organism: | Mycobacterium tuberculosis |
Reign: | Bacteria |
TaxID: | 83332 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 29.363 |
---|---|
Number of residues: | 28 |
Including | |
Standard Amino Acids: | 27 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.995 | 803.250 |
% Hydrophobic | % Polar |
---|---|
41.60 | 58.40 |
According to VolSite |
HET Code: | NDP |
---|---|
Formula: | C21H26N7O17P3 |
Molecular weight: | 741.389 g/mol |
DrugBank ID: | DB02338 |
Buried Surface Area: | 54.66 % |
Polar Surface area: | 404.9 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 22 |
H-Bond Donors: | 5 |
Rings: | 5 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 13 |
X | Y | Z |
---|---|---|
71.3474 | -8.56027 | 134.011 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O3B | N | THR- 21 | 3.17 | 130.31 | H-Bond (Protein Donor) |
O1X | OG1 | THR- 21 | 2.94 | 136.41 | H-Bond (Protein Donor) |
O3B | OG1 | THR- 21 | 2.58 | 154.15 | H-Bond (Ligand Donor) |
O1A | N | SER- 23 | 2.74 | 161.49 | H-Bond (Protein Donor) |
O2N | N | ILE- 24 | 2.8 | 161.87 | H-Bond (Protein Donor) |
O2B | N | GLY- 47 | 2.81 | 162.55 | H-Bond (Protein Donor) |
O3X | N | GLY- 47 | 3.26 | 120.59 | H-Bond (Protein Donor) |
O3X | N | GLY- 48 | 2.89 | 155.2 | H-Bond (Protein Donor) |
O3X | N | HIS- 50 | 3.12 | 151.3 | H-Bond (Protein Donor) |
C5B | CG2 | VAL- 105 | 3.46 | 0 | Hydrophobic |
O2N | O | HOH- 507 | 2.61 | 161.34 | H-Bond (Protein Donor) |