2.300 Å
X-ray
2013-12-09
Name: | Mitochondrial dynamics protein MID51 |
---|---|
ID: | MID51_HUMAN |
AC: | Q9NQG6 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
D | 100 % |
B-Factor: | 40.410 |
---|---|
Number of residues: | 32 |
Including | |
Standard Amino Acids: | 32 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.238 | 1350.000 |
% Hydrophobic | % Polar |
---|---|
47.50 | 52.50 |
According to VolSite |
HET Code: | GDP |
---|---|
Formula: | C10H12N5O11P2 |
Molecular weight: | 440.177 g/mol |
DrugBank ID: | DB04315 |
Buried Surface Area: | 52.05 % |
Polar Surface area: | 276.39 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 1 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
0.0811071 | 6.54904 | -45.808 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N2 | OG | SER- 187 | 2.93 | 169.23 | H-Bond (Ligand Donor) |
O3B | OG | SER- 189 | 3.14 | 151.81 | H-Bond (Protein Donor) |
O2A | N | SER- 189 | 2.96 | 140.58 | H-Bond (Protein Donor) |
O2B | NE2 | HIS- 201 | 2.55 | 164.99 | H-Bond (Protein Donor) |
N2 | OE1 | GLN- 203 | 3.35 | 163.57 | H-Bond (Ligand Donor) |
O1A | CZ | ARG- 342 | 3.63 | 0 | Ionic (Protein Cationic) |
O1A | NE | ARG- 342 | 2.59 | 154.2 | H-Bond (Protein Donor) |
O2A | NE | ARG- 342 | 3.48 | 125.53 | H-Bond (Protein Donor) |
O3B | NZ | LYS- 368 | 3.08 | 147.99 | H-Bond (Protein Donor) |
O3A | NZ | LYS- 368 | 3.16 | 126.63 | H-Bond (Protein Donor) |
O3B | NZ | LYS- 368 | 3.08 | 0 | Ionic (Protein Cationic) |