Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
5i9e | ATP | Actin-related protein 4 |
PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
---|---|---|---|---|---|
5i9e | ATP | Actin-related protein 4 | / | 1.000 | |
1typ | FAD | Trypanothione reductase | 1.8.1.12 | 0.522 | |
2a94 | AP0 | L-lactate dehydrogenase | 1.1.1.27 | 0.516 | |
2c1b | CQP | cAMP-dependent protein kinase catalytic subunit alpha | 2.7.11.11 | 0.504 | |
5er0 | FAD | Uncharacterized NAD(FAD)-dependent dehydrogenase | / | 0.490 | |
4dna | FAD | Probable glutathione reductase | / | 0.489 | |
2j4d | FAD | Cryptochrome DASH, chloroplastic/mitochondrial | / | 0.477 | |
1xe5 | 5FE | Plasmepsin-2 | 3.4.23.39 | 0.476 | |
3uyl | TYD | Probable NDP-rhamnosyltransferase | / | 0.476 | |
1nhq | FAD | NADH peroxidase | 1.11.1.1 | 0.475 | |
2il2 | LIX | Renin | 3.4.23.15 | 0.475 | |
1gg5 | E09 | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.474 | |
2jk6 | FAD | Trypanothione reductase | / | 0.474 | |
3wqm | B29 | Diterpene synthase | 3.1.7.8 | 0.473 | |
5c3j | FAD | Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial | / | 0.473 | |
1gsn | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.471 | |
4i1i | NAD | Malate dehydrogenase | / | 0.471 | |
4mht | SAH | Modification methylase HhaI | 2.1.1.37 | 0.471 | |
3afh | GSU | Glutamate--tRNA ligase 2 | / | 0.470 | |
2qs3 | UBE | Glutamate receptor ionotropic, kainate 1 | / | 0.469 | |
4opg | FDA | Conserved Archaeal protein | / | 0.469 | |
1ebd | FAD | Dihydrolipoyl dehydrogenase | 1.8.1.4 | 0.468 | |
2zba | ZBA | Trichothecene 3-O-acetyltransferase | / | 0.468 | |
4an4 | DUD | Putative glycosyl transferase | / | 0.468 | |
5ahs | FAD | Acyl-CoA dehydrogenase | / | 0.468 | |
2w0h | FAD | Trypanothione reductase | / | 0.467 | |
3lqf | NAD | Galactitol dehydrogenase | / | 0.467 | |
3uzw | NAP | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.467 | |
1mjb | ACO | Histone acetyltransferase ESA1 | / | 0.466 | |
2g24 | 7IG | Renin | 3.4.23.15 | 0.466 | |
2v2q | NVG | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase | / | 0.465 | |
2wow | FAD | Trypanothione reductase | / | 0.465 | |
4b65 | FAD | L-ornithine N(5)-monooxygenase | / | 0.465 | |
1fea | FAD | Trypanothione reductase | 1.8.1.12 | 0.463 | |
3pm9 | FAD | Putative oxidoreductase | / | 0.463 | |
5ah5 | LSS | Leucine--tRNA ligase | / | 0.463 | |
1ger | FAD | Glutathione reductase | 1.8.1.7 | 0.462 | |
1tyt | FAD | Trypanothione reductase | 1.8.1.12 | 0.462 | |
2ahr | NAP | Pyrroline-5-carboxylate reductase | / | 0.462 | |
1lwi | NAP | 3-alpha-hydroxysteroid dehydrogenase | 1.1.1.50 | 0.461 | |
2hqm | FAD | Glutathione reductase | 1.8.1.7 | 0.461 | |
2ylz | FAD | Phenylacetone monooxygenase | 1.14.13.92 | 0.461 | |
3sqp | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.461 | |
4a6r | TA8 | Probable aminotransferase | / | 0.461 | |
4e32 | DWN | Methyltransferase | / | 0.461 | |
4la1 | FAD | Thioredoxin glutathione reductase | / | 0.461 | |
5jsc | FAD | Putative acyl-CoA dehydrogenase | / | 0.461 | |
1lbc | CYZ | Glutamate receptor 2 | / | 0.459 | |
1szg | FNS | Cytochrome b2, mitochondrial | 1.1.2.3 | 0.459 | |
1w4x | FAD | Phenylacetone monooxygenase | 1.14.13.92 | 0.459 | |
2cfy | FAD | Thioredoxin reductase 1, cytoplasmic | 1.8.1.9 | 0.459 | |
2g1o | 2IG | Renin | 3.4.23.15 | 0.459 | |
2iib | C5P | Alpha-2,3/2,6-sialyltransferase/sialidase | / | 0.459 | |
4fsl | 0VB | Beta-secretase 1 | 3.4.23.46 | 0.459 | |
4opi | FDA | Conserved Archaeal protein | / | 0.459 | |
4ypa | SAM | Histone-lysine N-methyltransferase ASH1L | 2.1.1.43 | 0.459 | |
1u7h | NAD | Putative ornithine cyclodeaminase | / | 0.458 | |
2a92 | NAI | L-lactate dehydrogenase | / | 0.458 | |
2cnt | COA | Ribosomal-protein-alanine acetyltransferase | / | 0.458 | |
3ean | FAD | Thioredoxin reductase 1, cytoplasmic | 1.8.1.9 | 0.458 | |
1xkv | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.457 | |
2a4x | BLM | Mitomycin-binding protein | / | 0.457 | |
2jds | L20 | cAMP-dependent protein kinase catalytic subunit alpha | 2.7.11.11 | 0.457 | |
3dm5 | GDP | Signal recognition particle 54 kDa protein | / | 0.457 | |
4hhz | 15S | Poly [ADP-ribose] polymerase 1 | 2.4.2.30 | 0.457 | |
1x1a | SAM | C-20 methyltransferase | / | 0.456 | |
2bfq | AR6 | [Protein ADP-ribosylglutamate] hydrolase AF_1521 | 3.2.2 | 0.456 | |
2ztl | NAD | D(-)-3-hydroxybutyrate dehydrogenase | / | 0.456 | |
3ab1 | FAD | Ferredoxin--NADP reductase | 1.18.1.2 | 0.456 | |
3em0 | CHD | Fatty acid-binding protein 6, ileal (gastrotropin) | / | 0.456 | |
3grs | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.456 | |
3mpi | FAD | Glutaryl-CoA dehydrogenase | 1.3.99.32 | 0.456 | |
3rpe | FAD | Putative modulator of drug activity | / | 0.456 | |
4eb7 | PLP | Cysteine desulfurase IscS 2 | / | 0.456 | |
4eu9 | COA | Succinyl-CoA:acetate CoA-transferase | / | 0.456 | |
4hp8 | NAP | 2-deoxy-D-gluconate 3-dehydrogenase | / | 0.456 | |
4kpr | FAD | Thioredoxin reductase 1, cytoplasmic | 1.8.1.9 | 0.456 | |
1gre | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.455 | |
2fxv | 5GP | Xanthine phosphoribosyltransferase | 2.4.2.22 | 0.455 | |
4gxs | 0YS | Glutamate receptor 2 | / | 0.455 | |
1g1a | NAD | dTDP-glucose 4,6-dehydratase | / | 0.454 | |
1qbq | HFP | Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha | / | 0.454 | |
1qbq | HFP | Protein farnesyltransferase subunit beta | 2.5.1.58 | 0.454 | |
2vtb | FAD | Cryptochrome DASH, chloroplastic/mitochondrial | / | 0.454 | |
2wya | HMG | Hydroxymethylglutaryl-CoA synthase, mitochondrial | 2.3.3.10 | 0.454 | |
3cb2 | GDP | Tubulin gamma-1 chain | / | 0.454 | |
3coz | 54H | Pantothenate synthetase | 6.3.2.1 | 0.454 | |
3r6s | CMP | CRP-like cAMP-activated global transcriptional regulator | / | 0.454 | |
1t2c | NAI | L-lactate dehydrogenase | 1.1.1.27 | 0.453 | |
2cv2 | GSU | Glutamate--tRNA ligase | 6.1.1.17 | 0.453 | |
3buv | NAP | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.453 | |
3cic | 316 | Beta-secretase 1 | 3.4.23.46 | 0.453 | |
3dk8 | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.453 | |
3hlw | CE3 | Beta-lactamase | / | 0.453 | |
3kb1 | ADP | Iron-sulfur cluster carrier protein | / | 0.453 | |
5fs7 | FAD | Apoptosis-inducing factor 1, mitochondrial | 1.1.1 | 0.453 | |
5p2p | DHG | Phospholipase A2, major isoenzyme | 3.1.1.4 | 0.453 | |
1bv9 | XV6 | Gag-Pol polyprotein | 3.4.23.16 | 0.452 | |
1ege | FAD | Medium-chain specific acyl-CoA dehydrogenase, mitochondrial | 1.3.8.7 | 0.452 | |
1eve | E20 | Acetylcholinesterase | 3.1.1.7 | 0.452 | |
1knr | FAD | L-aspartate oxidase | 1.4.3.16 | 0.452 | |
1yqz | COA | Coenzyme A disulfide reductase | / | 0.452 | |
3gnv | XNZ | Genome polyprotein | 2.7.7.48 | 0.452 | |
3iob | A4D | Pantothenate synthetase | 6.3.2.1 | 0.452 | |
3uax | NOS | Purine nucleoside phosphorylase DeoD-type | / | 0.452 | |
4eb5 | PLP | Cysteine desulfurase IscS 2 | / | 0.452 | |
1w6h | TIT | Plasmepsin-2 | 3.4.23.39 | 0.451 | |
2c20 | NAD | UDP-glucose 4-epimerase | / | 0.451 | |
2hpv | FMN | FMN-dependent NADH-azoreductase | 1.7 | 0.451 | |
3kpb | SAM | Uncharacterized protein MJ0100 | / | 0.451 | |
3ljt | LA3 | A disintegrin and metalloproteinase with thrombospondin motifs 5 | 3.4.24 | 0.451 | |
3lpk | Z76 | Beta-secretase 1 | 3.4.23.46 | 0.451 | |
4lcj | NAD | C-terminal-binding protein 2 | / | 0.451 | |
1grg | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.450 | |
1k6v | XN2 | Gag-Pol polyprotein | 3.4.23.16 | 0.450 | |
2y0m | ACO | Histone acetyltransferase KAT8 | / | 0.450 | |
3bgc | LJH | Gag-Pol polyprotein | 3.4.23.16 | 0.450 | |
3dyn | PCG | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.450 | |
3fkt | SII | Beta-secretase 1 | 3.4.23.46 | 0.450 | |
3qfb | FAD | Thioredoxin reductase 1, cytoplasmic | 1.8.1.9 | 0.450 | |
3x2e | NAI | Adenosylhomocysteinase | / | 0.450 | |
4bby | FAD | Alkyldihydroxyacetonephosphate synthase, peroxisomal | 2.5.1.26 | 0.450 | |
4d5g | FAD | Cyclohexane-1,2-dione hydrolase | 3.7.1.11 | 0.450 | |
4de5 | 0JD | Pantothenate synthetase | 6.3.2.1 | 0.450 | |
4dpw | AGS | Mevalonate diphosphate decarboxylase | / | 0.450 | |
4eag | ATP | 5'-AMP-activated protein kinase subunit gamma-1 | / | 0.450 | |
4k28 | NAD | Shikimate dehydrogenase family protein | / | 0.450 | |
1gco | NAD | Glucose 1-dehydrogenase | 1.1.1.47 | 0.449 | |
1np7 | FAD | Cryptochrome DASH | / | 0.449 | |
1odc | A8B | Acetylcholinesterase | 3.1.1.7 | 0.449 | |
1vik | BAY | Gag-Pol polyprotein | / | 0.449 | |
2g1r | 3IG | Renin | 3.4.23.15 | 0.449 | |
2xlr | FAD | Putative flavin-containing monooxygenase | / | 0.449 | |
3lzx | FAD | Ferredoxin--NADP reductase 2 | 1.18.1.2 | 0.449 | |
3pnd | FAD | FAD:protein FMN transferase | / | 0.449 | |
3vyd | VYD | Renin | 3.4.23.15 | 0.449 | |
4eqw | FAD | Coenzyme A disulfide reductase | / | 0.449 | |
4fse | 0VA | Beta-secretase 1 | 3.4.23.46 | 0.449 | |
4gr1 | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.449 | |
4i8z | G08 | Gag-Pol polyprotein | 3.4.23.16 | 0.449 | |
4ozt | P1A | Ecdysone receptor, putative | / | 0.449 | |
1p1h | NAD | Inositol-3-phosphate synthase | 5.5.1.4 | 0.448 | |
2fhn | BNI | Avidin-related protein 4/5 | / | 0.448 | |
3em3 | 478 | Gag-Pol polyprotein | 3.4.23.16 | 0.448 | |
3itj | FAD | Thioredoxin reductase 1 | 1.8.1.9 | 0.448 | |
3koy | Z97 | D-ornithine 4,5-aminomutase subunit beta | / | 0.448 | |
4j4n | D44 | Peptidylprolyl isomerase | / | 0.448 | |
4m83 | ERY | Oleandomycin glycosyltransferase | 2.4.1 | 0.448 | |
1feb | FAD | Trypanothione reductase | 1.8.1.12 | 0.447 | |
1h74 | ADP | Homoserine kinase | 2.7.1.39 | 0.447 | |
1sgu | MK1 | Gag-Pol polyprotein | 3.4.23.16 | 0.447 | |
1u33 | LM2 | Pancreatic alpha-amylase | / | 0.447 | |
3cow | 52H | Pantothenate synthetase | 6.3.2.1 | 0.447 | |
3mj4 | URM | UDP-galactopyranose mutase | / | 0.447 | |
3zbr | NAP | 2',3'-cyclic-nucleotide 3'-phosphodiesterase | 3.1.4.37 | 0.447 | |
4dbz | NDP | Putative ketoacyl reductase | 1.3.1 | 0.447 | |
4l6s | 1WQ | Poly [ADP-ribose] polymerase 1 | 2.4.2.30 | 0.447 | |
4xgu | ADP | Putative pachytene checkpoint protein 2 | / | 0.447 | |
4yry | FAD | Glutamate synthase, beta subunit | / | 0.447 | |
1d4d | FAD | Fumarate reductase flavoprotein subunit | 1.3.5.4 | 0.446 | |
1gee | NAD | Glucose 1-dehydrogenase | 1.1.1.47 | 0.446 | |
1qo8 | FAD | Fumarate reductase flavoprotein subunit | / | 0.446 | |
2daa | DCS | D-alanine aminotransferase | 2.6.1.21 | 0.446 | |
2zat | NAP | Dehydrogenase/reductase SDR family member 4 | 1.1.1.184 | 0.446 | |
3ag6 | PAJ | Pantothenate synthetase | / | 0.446 | |
3hy7 | 097 | A disintegrin and metalloproteinase with thrombospondin motifs 5 | 3.4.24 | 0.446 | |
3k5f | AYH | Beta-secretase 1 | 3.4.23.46 | 0.446 | |
4amb | DUD | Putative glycosyl transferase | / | 0.446 | |
4eak | ATP | 5'-AMP-activated protein kinase subunit gamma-1 | / | 0.446 | |
4jnq | FDA | Thioredoxin reductase | / | 0.446 | |
4qof | FMN | Ribosyldihydronicotinamide dehydrogenase [quinone] | / | 0.446 | |
5hg0 | SAM | Pantothenate synthetase | / | 0.446 | |
2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.445 | |
2gmh | FAD | Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial | 1.5.5.1 | 0.445 | |
2oeg | UPG | UDP-glucose pyrophosphorylase | / | 0.445 | |
2q2v | NAD | Beta-D-hydroxybutyrate dehydrogenase | / | 0.445 | |
2yqs | UD1 | UDP-N-acetylglucosamine pyrophosphorylase | 2.7.7.23 | 0.445 | |
3ivx | FG6 | Pantothenate synthetase | 6.3.2.1 | 0.445 | |
3ixk | 929 | Beta-secretase 1 | 3.4.23.46 | 0.445 | |
3nsh | 957 | Beta-secretase 1 | 3.4.23.46 | 0.445 | |
4i0i | 957 | Beta-secretase 1 | 3.4.23.46 | 0.445 | |
1grb | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.444 | |
3dyq | PCG | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.444 | |
3eks | CY9 | Actin-5C | / | 0.444 | |
4h8a | NAI | Ureidoglycolate dehydrogenase (NAD(+)) | 1.1.1.350 | 0.444 | |
1fy7 | COA | Histone acetyltransferase ESA1 | / | 0.443 | |
1k4q | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.443 | |
2avv | MK1 | Gag-Pol polyprotein | 3.4.23.16 | 0.443 | |
2f7x | 4EA | cAMP-dependent protein kinase catalytic subunit alpha | 2.7.11.11 | 0.443 | |
2g25 | TDK | Pyruvate dehydrogenase E1 component | 1.2.4.1 | 0.443 | |
2ivp | ATP | tRNA N6-adenosine threonylcarbamoyltransferase | / | 0.443 | |
2v13 | C40 | Renin | 3.4.23.15 | 0.443 | |
2vbq | BSJ | Aminoglycoside N(6')-acetyltransferase type 1 | / | 0.443 | |
2wdz | NAD | Galactitol dehydrogenase | / | 0.443 | |
3ndj | JHZ | Methyltransferase | / | 0.443 | |
3pdn | SFG | Histone-lysine N-methyltransferase SMYD3 | 2.1.1.43 | 0.443 | |
3tox | NAP | Putative oxidoreductase | / | 0.443 | |
4bca | FAD | Alkyldihydroxyacetonephosphate synthase, peroxisomal | 2.5.1.26 | 0.443 | |
4emt | C2E | Stimulator of interferon genes protein | / | 0.443 | |
4g6h | FAD | Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial | 1.6.5.9 | 0.443 | |
5af7 | FAD | Acyl-CoA dehydrogenase | / | 0.443 | |
5c1m | CLR | Mu-type opioid receptor | / | 0.443 | |
1bwb | 146 | Gag-Pol polyprotein | 3.4.23.16 | 0.442 | |
1k6t | XN1 | Gag-Pol polyprotein | 3.4.23.16 | 0.442 | |
1sb9 | UPG | WbpP | / | 0.442 | |
1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.442 | |
1yqz | FAD | Coenzyme A disulfide reductase | / | 0.442 | |
2jdt | I5S | cAMP-dependent protein kinase catalytic subunit alpha | 2.7.11.11 | 0.442 | |
2uzf | CAA | 1,4-dihydroxy-2-naphthoyl-CoA synthase | / | 0.442 | |
3dk4 | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.442 | |
3wag | TYD | Glycosyltransferase | / | 0.442 | |
4bft | ZVT | Pantothenate kinase | 2.7.1.33 | 0.442 | |
4kx6 | FAD | Fumarate reductase flavoprotein subunit | 1.3.5.4 | 0.442 | |
4z24 | FAD | Putative GMC-type oxidoreductase R135 | 1 | 0.442 | |
2g1s | 4IG | Renin | 3.4.23.15 | 0.441 | |
2i4q | UA4 | Renin | 3.4.23.15 | 0.441 | |
2rcy | NAP | Pyrroline-5-carboxylate reductase | / | 0.441 | |
3bv7 | NAP | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.441 | |
3kmx | G00 | Beta-secretase 1 | 3.4.23.46 | 0.441 | |
3nu6 | 478 | Gag-Pol polyprotein | 3.4.23.16 | 0.441 | |
4dfg | 0JV | Gag-Pol polyprotein | 3.4.23.16 | 0.441 | |
4k9h | 1QU | Beta-secretase 1 | 3.4.23.46 | 0.441 | |
5dg3 | U21 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | / | 0.441 | |
5e7o | MGD | DMSO reductase family type II enzyme, molybdopterin subunit | / | 0.441 | |
5f8e | SAH | Possible transcriptional regulatory protein | / | 0.441 | |
1bwc | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.440 | |
1bxk | NAD | dTDP-glucose 4,6-dehydratase 2 | / | 0.440 | |
1h6v | FAD | Thioredoxin reductase 1, cytoplasmic | 1.8.1.9 | 0.440 | |
1lqu | NDP | NADPH-ferredoxin reductase FprA | 1.18.1.2 | 0.440 | |
1npa | 3NH | Gag-Pol polyprotein | 3.4.23.16 | 0.440 | |
1npw | LGZ | Gag-Pol polyprotein | 3.4.23.16 | 0.440 | |
1qx4 | FAD | NADH-cytochrome b5 reductase 3 | 1.6.2.2 | 0.440 | |
1rwb | NAD | Glucose 1-dehydrogenase | 1.1.1.47 | 0.440 | |
1t9g | FAD | Medium-chain specific acyl-CoA dehydrogenase, mitochondrial | 1.3.8.7 | 0.440 | |
2djx | FMN | Dihydroorotate dehydrogenase (fumarate) | 1.3.98.1 | 0.440 | |
2f81 | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.440 | |
2fon | FAD | Acyl-coenzyme A oxidase | / | 0.440 | |
2p4j | 23I | Beta-secretase 1 | 3.4.23.46 | 0.440 | |
3ioe | A7D | Pantothenate synthetase | 6.3.2.1 | 0.440 | |
3ivg | FG5 | Pantothenate synthetase | 6.3.2.1 | 0.440 | |
3qfr | FMN | NADPH--cytochrome P450 reductase | / | 0.440 | |
3s5w | NAP | L-ornithine N(5)-monooxygenase | / | 0.440 | |
4em4 | FAD | Coenzyme A disulfide reductase | / | 0.440 | |
4h4u | FAD | Biphenyl dioxygenase ferredoxin reductase subunit | / | 0.440 | |
4jnk | ZHK | L-lactate dehydrogenase A chain | 1.1.1.27 | 0.440 |