2.850 Å
X-ray
2014-12-21
Name: | Adenosylhomocysteinase |
---|---|
ID: | SAHH_THEMA |
AC: | O51933 |
Organism: | Thermotoga maritima |
Reign: | Bacteria |
TaxID: | 243274 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 90 % |
B | 10 % |
B-Factor: | 70.253 |
---|---|
Number of residues: | 50 |
Including | |
Standard Amino Acids: | 50 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.495 | 1991.250 |
% Hydrophobic | % Polar |
---|---|
37.29 | 62.71 |
According to VolSite |
HET Code: | NAI |
---|---|
Formula: | C21H27N7O14P2 |
Molecular weight: | 663.425 g/mol |
DrugBank ID: | DB00157 |
Buried Surface Area: | 60.08 % |
Polar Surface area: | 342.9 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 19 |
H-Bond Donors: | 6 |
Rings: | 5 |
Aromatic rings: | 2 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 11 |
X | Y | Z |
---|---|---|
2.73091 | 20.1016 | 46.197 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1N | ND2 | ASN- 175 | 3.11 | 134.08 | H-Bond (Protein Donor) |
C4N | CG2 | THR- 179 | 4.04 | 0 | Hydrophobic |
O2N | N | CYS- 208 | 3.11 | 157.67 | H-Bond (Protein Donor) |
C5D | CB | CYS- 208 | 4.25 | 0 | Hydrophobic |
C1D | SG | CYS- 208 | 4.29 | 0 | Hydrophobic |
C4N | SG | CYS- 208 | 4.32 | 0 | Hydrophobic |
O3B | OE2 | GLU- 227 | 3.17 | 159.96 | H-Bond (Ligand Donor) |
O2B | OE1 | GLU- 227 | 2.71 | 154.7 | H-Bond (Ligand Donor) |
O2B | N | ASP- 229 | 3.48 | 125.81 | H-Bond (Protein Donor) |
C1B | CB | SER- 260 | 4.03 | 0 | Hydrophobic |
N7N | O | ALA- 283 | 2.99 | 149.7 | H-Bond (Ligand Donor) |
O7N | ND2 | ASN- 330 | 3.49 | 146.97 | H-Bond (Protein Donor) |
N7N | OD1 | ASN- 330 | 3.19 | 157.72 | H-Bond (Ligand Donor) |
O7N | NE2 | HIS- 337 | 3.11 | 130.22 | H-Bond (Protein Donor) |