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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4l425FIRibosomal protein S6 kinase beta-12.7.11.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
4l425FIRibosomal protein S6 kinase beta-12.7.11.11.000
4l3j5FIRibosomal protein S6 kinase beta-12.7.11.10.608
3we45FIRibosomal protein S6 kinase beta-12.7.11.10.603
4l3l5FIRibosomal protein S6 kinase beta-12.7.11.10.588
2hog710Serine/threonine-protein kinase Chk12.7.11.10.517
4ftt6HKSerine/threonine-protein kinase Chk12.7.11.10.515
1uu8BI13-phosphoinositide-dependent protein kinase 12.7.11.10.510
3ambVX6cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.508
4ftiH7KSerine/threonine-protein kinase Chk12.7.11.10.497
2xckMH43-phosphoinositide-dependent protein kinase 12.7.11.10.496
4l455FIRibosomal protein S6 kinase beta-12.7.11.10.495
4k1b1OCSerine/threonine-protein kinase pim-12.7.11.10.494
1uu3LY43-phosphoinositide-dependent protein kinase 12.7.11.10.493
1uvrBI83-phosphoinositide-dependent protein kinase 12.7.11.10.491
1zrzBI1Protein kinase C iota type2.7.11.130.490
3zh8C58Protein kinase C iota type2.7.11.130.489
4fr4STUSerine/threonine-protein kinase 32A2.7.11.10.487
3lijANPCalcium/calmodulin dependent protein kinase with a kinase domain and 4 calmodulin like EF hands/0.486
4xx9ATP3-phosphoinositide-dependent protein kinase 12.7.11.10.485
3rwpABQ3-phosphoinositide-dependent protein kinase 12.7.11.10.484
2r7b2533-phosphoinositide-dependent protein kinase 12.7.11.10.483
3a99ANPSerine/threonine-protein kinase pim-12.7.11.10.482
3a7hATPSerine/threonine-protein kinase 242.7.11.10.481
1uu7BI23-phosphoinositide-dependent protein kinase 12.7.11.10.479
1yvj4STTyrosine-protein kinase JAK32.7.10.20.479
2hy81STSerine/threonine-protein kinase PAK 12.7.11.10.479
4enxZ20Serine/threonine-protein kinase pim-12.7.11.10.479
1uu9BI33-phosphoinositide-dependent protein kinase 12.7.11.10.478
3tkh07SSerine/threonine-protein kinase Chk12.7.11.10.476
3v8w0G2Tyrosine-protein kinase ITK/TSK2.7.10.20.476
4l445FIRibosomal protein S6 kinase beta-12.7.11.10.476
4rqvATP3-phosphoinositide-dependent protein kinase 12.7.11.10.476
1wvxBD4Death-associated protein kinase 12.7.11.10.475
4gmy0X5Tyrosine-protein kinase JAK2/0.475
1okzUCN3-phosphoinositide-dependent protein kinase 12.7.11.10.473
3t14FADSulfide-quinone reductase/0.473
4eutBX7Serine/threonine-protein kinase TBK12.7.11.10.472
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.470
1uuoBRFDihydroorotate dehydrogenase (quinone), mitochondrial1.3.5.20.470
2cgw3C3Serine/threonine-protein kinase Chk12.7.11.10.470
1k6pXN3Gag-Pol polyprotein3.4.23.160.469
2pe15173-phosphoinositide-dependent protein kinase 12.7.11.10.469
2vd5BI8Myotonin-protein kinase2.7.11.10.469
4k181OBSerine/threonine-protein kinase pim-12.7.11.10.469
2h8hH8HProto-oncogene tyrosine-protein kinase Src2.7.10.20.468
2hy0306Serine/threonine-protein kinase Chk12.7.11.10.467
3vt9YI4Vitamin D3 receptor/0.467
2b00GCHPhospholipase A2, major isoenzyme3.1.1.40.466
2c7xNRBCytochrome P450 monooxygenase PikC/0.466
2objVRVSerine/threonine-protein kinase pim-12.7.11.10.466
3iok1P6Tyrosine-protein kinase JAK2/0.466
3lcdBDYMacrophage colony-stimulating factor 1 receptor2.7.10.10.466
4c4f7CEDual specificity protein kinase TTK2.7.12.10.466
4c4g7RODual specificity protein kinase TTK2.7.12.10.466
4c62XWWTyrosine-protein kinase JAK2/0.466
4riyADPEpidermal growth factor receptor2.7.10.10.466
1xr1ANPSerine/threonine-protein kinase pim-12.7.11.10.465
2bdf24AProto-oncogene tyrosine-protein kinase Src2.7.10.20.465
2xf04UBSerine/threonine-protein kinase Chk12.7.11.10.465
4fv9E71Mitogen-activated protein kinase 12.7.11.240.465
4aw3MYVMycinamicin IV hydroxylase/epoxidase/0.464
5ackATP3-phosphoinositide-dependent protein kinase 12.7.11.10.464
3at4CCKCasein kinase II subunit alpha2.7.11.10.463
4bbe3O4Tyrosine-protein kinase JAK2/0.463
4kikKSAInhibitor of nuclear factor kappa-B kinase subunit beta2.7.11.100.463
2nruT12Interleukin-1 receptor-associated kinase 42.7.11.10.462
2ydiYDISerine/threonine-protein kinase Chk12.7.11.10.462
3ma301ISerine/threonine-protein kinase pim-12.7.11.10.462
3r04UNQSerine/threonine-protein kinase pim-12.7.11.10.462
3t2zFADSulfide-quinone reductase/0.462
4a06ATP3-phosphoinositide-dependent protein kinase 12.7.11.10.462
4i22IREEpidermal growth factor receptor2.7.10.10.462
4kzoNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.462
4l7sG7KTyrosine-protein kinase ITK/TSK2.7.10.20.462
1qpjSTUTyrosine-protein kinase Lck2.7.10.20.461
2j7t274Serine/threonine-protein kinase 102.7.11.10.461
3opdHIEHeat shock protein 83/0.461
4fuyEK2Mitogen-activated protein kinase 12.7.11.240.461
1xkdNAPIsocitrate dehydrogenase [NADP]/0.460
2xbjXBJSerine/threonine-protein kinase Chk22.7.11.10.460
3deyDHTEstradiol 17-beta-dehydrogenase 11.1.1.620.460
3klmDHTEstradiol 17-beta-dehydrogenase 11.1.1.620.460
3t2yFADSulfide-quinone reductase/0.460
3v5l0G1Tyrosine-protein kinase ITK/TSK2.7.10.20.460
4hge15VTyrosine-protein kinase JAK2/0.460
4ji91M3Tyrosine-protein kinase JAK2/0.460
4l435FIRibosomal protein S6 kinase beta-12.7.11.10.460
4oa9ANPProtein BRASSINOSTEROID INSENSITIVE 12.7.10.10.460
3nunJMZ3-phosphoinositide-dependent protein kinase 12.7.11.10.459
2ayp43ASerine/threonine-protein kinase Chk12.7.11.10.458
2x6dX6DAurora kinase A2.7.11.10.458
3cylVITBasic phospholipase A2 homolog piratoxin-2/0.458
3qd33Q53-phosphoinositide-dependent protein kinase 12.7.11.10.457
3rak03ZCyclin-dependent kinase 22.7.11.220.457
4ez50RSCyclin-dependent kinase 62.7.11.220.457
4izy1J2Mitogen-activated protein kinase 82.7.11.240.457
5dt0SKEAurora kinase A2.7.11.10.457
2znnS44Peroxisome proliferator-activated receptor alpha/0.456
3orzBI43-phosphoinositide-dependent protein kinase 12.7.11.10.456
3zep1NXTyrosine-protein kinase JAK32.7.10.20.456
4bbfO19Tyrosine-protein kinase JAK2/0.456
4o0rX4ZSerine/threonine-protein kinase PAK 12.7.11.10.456
2c3lIDZSerine/threonine-protein kinase Chk12.7.11.10.455
3a4oSTUTyrosine-protein kinase Lyn2.7.10.20.455
3bqr4RBDeath-associated protein kinase 3/0.455
3q9xEMOCasein kinase II subunit alpha2.7.11.10.455
3sz0FADSulfide-quinone reductase/0.455
4flh14KPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.455
4fsrHKCSerine/threonine-protein kinase Chk12.7.11.10.455
2pywADPMethylthioribose kinase2.7.1.1000.454
2w1fL0FAurora kinase A2.7.11.10.454
3a62STURibosomal protein S6 kinase beta-12.7.11.10.454
3inmNDPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.454
3ofm4B0Casein kinase II subunit alpha'2.7.11.10.454
3tmz06XCytochrome P450 2B41.14.14.10.454
3vt8YI3Vitamin D3 receptor/0.454
4cd0AWJALK tyrosine kinase receptor2.7.10.10.454
4dit0KDGlycogen synthase kinase-3 beta2.7.11.260.454
4rupH97Vitamin D3 receptor A/0.454
4y8wSTRSteroid 21-hydroxylase/0.454
1h66FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.453
1xl2189Gag-Pol polyprotein3.4.23.160.453
2izrBRKCasein kinase I isoform gamma-32.7.11.10.453
2vv9IM9Cyclin-dependent kinase 22.7.11.220.453
3ggfGVDSerine/threonine-protein kinase 26/0.453
3zk5Z18Cytochrome P450 monooxygenase PikC/0.453
4jayFADUDP-N-acetylenolpyruvoylglucosamine reductase/0.453
1h69FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.452
1pjkANPCasein kinase II subunit alpha2.7.11.10.452
1q3wATUGlycogen synthase kinase-3 beta2.7.11.260.452
1yolS03Proto-oncogene tyrosine-protein kinase Src2.7.10.20.452
4c34STUcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.452
4f640S8Fibroblast growth factor receptor 1/0.452
3bkbSTUTyrosine-protein kinase Fes/Fps2.7.10.20.451
3fzpAGSProtein-tyrosine kinase 2-beta2.7.10.20.451
3v5j0F2Tyrosine-protein kinase ITK/TSK2.7.10.20.451
4ia2BIVVitamin D3 receptor A/0.451
1ie4T44Transthyretin/0.450
1j1cADPGlycogen synthase kinase-3 beta2.7.11.260.450
2r0uM54Serine/threonine-protein kinase Chk12.7.11.10.450
2ycqUPXSerine/threonine-protein kinase Chk22.7.11.10.450
2yirYIRSerine/threonine-protein kinase Chk22.7.11.10.450
3bheBZNGag-Pol polyprotein3.4.23.160.450
3ckxSTUSerine/threonine-protein kinase 242.7.11.10.450
3l08ZIGPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.450
3l8p0CEAngiopoietin-1 receptor2.7.10.10.450
3sw719KCyclin-dependent kinase 22.7.11.220.450
4acm7YGCyclin-dependent kinase 22.7.11.220.450
4c58824Cyclin-G-associated kinase2.7.11.10.450
4feq0T8Tyrosine-protein kinase receptor TYRO32.7.10.10.450
4ia7BIVVitamin D3 receptor A/0.450
4ivb1J5Tyrosine-protein kinase JAK1/0.450
4u97STUInterleukin-1 receptor-associated kinase 42.7.11.10.450
3sn6P0GBeta-2 adrenergic receptor/0.450
1k6tXN1Gag-Pol polyprotein3.4.23.160.449
1k6vXN2Gag-Pol polyprotein3.4.23.160.449
2i4jDRJPeroxisome proliferator-activated receptor gamma/0.449
3be9P04Casein kinase II subunit alpha2.7.11.10.449
3i4bZ48Glycogen synthase kinase-3 beta2.7.11.260.449
3nwxKVSGag-Pol polyprotein3.4.23.160.449
3oezSTIProto-oncogene tyrosine-protein kinase Src2.7.10.20.449
3qtzX42Cyclin-dependent kinase 22.7.11.220.449
3v9v21LPeroxisome proliferator-activated receptor gamma/0.449
4ewn0VRImidazole glycerol phosphate synthase subunit HisF4.1.30.449
4ft0HK9Serine/threonine-protein kinase Chk12.7.11.10.449
4u9aSTUInterleukin-1 receptor-associated kinase 42.7.11.10.449
1finATPCyclin-dependent kinase 22.7.11.220.448
1zeoC01Peroxisome proliferator-activated receptor gamma/0.448
2azzTCHPhospholipase A2, major isoenzyme3.1.1.40.448
2xc3RT8Steroid C26-monooxygenase1.14.13.1410.448
2y98MIVMycinamicin IV hydroxylase/epoxidase/0.448
4c4h7RODual specificity protein kinase TTK2.7.12.10.448
4dk50KOPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.448
4fko20KCyclin-dependent kinase 22.7.11.220.448
4nky3QZSteroid 17-alpha-hydroxylase/17,20 lyase/0.448
1pdhFASp-hydroxybenzoate hydroxylase/0.447
1qbgFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.447
2cmwOLPCasein kinase I isoform gamma-12.7.11.10.447
2j0m4STFocal adhesion kinase 12.7.10.20.447
3cblSTUTyrosine-protein kinase Fes/Fps2.7.10.20.447
3f69XDRSerine/threonine-protein kinase PknB2.7.11.10.447
3t8oATPRhodopsin kinase/0.447
4bf2STUMitogen-activated protein kinase kinase kinase 52.7.11.250.447
4g170VNCasein kinase I isoform gamma-32.7.11.10.447
4gj20XHNon-receptor tyrosine-protein kinase TYK22.7.10.20.447
4i0s1B5Tyrosine-protein kinase SYK2.7.10.20.447
4nxvGDPMitochondrial dynamics protein MID51/0.447
5dqrFAD7-hydroxymethyl chlorophyll a reductase, chloroplastic1.17.7.20.447
1pkdUCNCyclin-dependent kinase 22.7.11.220.446
2i4pDRHPeroxisome proliferator-activated receptor gamma/0.446
2om9AJAPeroxisome proliferator-activated receptor gamma/0.446
2phkATPPhosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform2.7.11.190.446
2w0jZATSerine/threonine-protein kinase Chk22.7.11.10.446
2ym7YM7Serine/threonine-protein kinase Chk12.7.11.10.446
3kpkFADSulfide-quinone reductase/0.446
3syiFADSulfide-quinone reductase/0.446
3vn2TLSPeroxisome proliferator-activated receptor gamma/0.446
4l06NAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.446
4nka2K7Fibroblast growth factor receptor 1/0.446
1bygSTUTyrosine-protein kinase CSK/0.445
1i7iAZ2Peroxisome proliferator-activated receptor gamma/0.445
1k6cMK1Gag-Pol polyprotein3.4.23.160.445
2cgu3A3Serine/threonine-protein kinase Chk12.7.11.10.445
2hb7O1CVitamin D3 receptor/0.445
2nrySTUInterleukin-1 receptor-associated kinase 42.7.11.10.445
2w05FRTCyclin-dependent kinase 22.7.11.220.445
3et7349Protein-tyrosine kinase 2-beta2.7.10.20.445
4fkv61KCyclin-dependent kinase 22.7.11.220.445
4ftr5HKSerine/threonine-protein kinase Chk12.7.11.10.445
4hvi19STyrosine-protein kinase JAK32.7.10.20.445
4wloNAIMalate dehydrogenase, mitochondrial1.1.1.370.445
1ad5ANPTyrosine-protein kinase HCK2.7.10.20.444
1jipKTN6-deoxyerythronolide B hydroxylase/0.444
1knuYPAPeroxisome proliferator-activated receptor gamma/0.444
2iw84SPCyclin-dependent kinase 22.7.11.220.444
2q59240Peroxisome proliferator-activated receptor gamma/0.444
3gobHXXDdmC/0.444
3nwq2NCGag-Pol polyprotein3.4.23.160.444
4fhi0S4Vitamin D3 receptor A/0.444
4grb0XGCasein kinase II subunit alpha2.7.11.10.444
4iaq2GM5-hydroxytryptamine receptor 1B/0.444
4kbk1QGCasein kinase I isoform delta2.7.11.10.444
4mq12C3Dual specificity tyrosine-phosphorylation-regulated kinase 1A2.7.12.10.444
5dr6SKEAurora kinase A2.7.11.10.444
5itzLOCTubulin beta-2B chain/0.444
1fvv107Cyclin-dependent kinase 22.7.11.220.443
1jioDEB6-deoxyerythronolide B hydroxylase/0.443
1xjdSTUProtein kinase C theta type2.7.11.130.443
2ckeIQUDeath-associated protein kinase 2/0.443
2hc4VDXVitamin D3 receptor A/0.443
2i4zDRHPeroxisome proliferator-activated receptor gamma/0.443
2qhn582Serine/threonine-protein kinase Chk12.7.11.10.443
2wmxZY6Serine/threonine-protein kinase Chk12.7.11.10.443
2y03Y01Beta-1 adrenergic receptor/0.443
2y46MIVMycinamicin IV hydroxylase/epoxidase/0.443
3e8eG98cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.443
3qd43Q63-phosphoinositide-dependent protein kinase 12.7.11.10.443
3t2kFADSulfide-quinone reductase/0.443
3vspEK8Peroxisome proliferator-activated receptor gamma/0.443
3vt65YIVitamin D3 receptor/0.443
3zewSTUEphrin type-B receptor 42.7.10.10.443
4anwO92Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.443
4aqc88ATyrosine-protein kinase JAK2/0.443
4c4jX21Dual specificity protein kinase TTK2.7.12.10.443
4fg7ATPCalcium/calmodulin-dependent protein kinase type 12.7.11.170.443
4fsnA58Serine/threonine-protein kinase Chk12.7.11.10.443
4g1wG1WMitogen-activated protein kinase 82.7.11.240.443
4mcv29KProto-oncogene tyrosine-protein kinase Src2.7.10.20.443
5dr9SKEAurora kinase A2.7.11.10.443
1kboFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.442
2c6hPXICytochrome P450 monooxygenase PikC/0.442
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.442
2h96893Mitogen-activated protein kinase 82.7.11.240.442
2nnhREACytochrome P450 2C8/0.442
2w9sTOPDihydrofolate reductase type 1 from Tn40031.5.1.30.442
2xchCKG3-phosphoinositide-dependent protein kinase 12.7.11.10.442
3bu5ATPInsulin receptor2.7.10.10.442
3oibFDAPutative acyl-CoA dehydrogenase/0.442
3sgtP09Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)/0.442
3w1f1O5Dual specificity protein kinase TTK2.7.12.10.442
4aguD15Cyclin-dependent kinase-like 1/0.442
4ccbOFGALK tyrosine kinase receptor2.7.10.10.442
4ezj0SCPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.442
4gevCB3Thymidylate synthase/0.442
4iwo1H4Serine/threonine-protein kinase TBK12.7.11.10.442
4j97ACPFibroblast growth factor receptor 2/0.442
4r21STRCytochrome P450 family 17 polypeptide 2/0.442
5a4kFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.442
1d4aFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.441
1okySTU3-phosphoinositide-dependent protein kinase 12.7.11.10.441
2c6eHPMAurora kinase A2.7.11.10.441
2fvdLIACyclin-dependent kinase 22.7.11.220.441
2ww4ADP4-diphosphocytidyl-2-C-methyl-D-erythritol kinase2.7.1.1480.441
3c0i3AMPeripheral plasma membrane protein CASK2.7.11.10.441
3t113T1Gag-Pol polyprotein3.4.23.160.441
4b7xNAPProbable oxidoreductase/0.441
4enyJ19Serine/threonine-protein kinase pim-12.7.11.10.441
4f4p0SBTyrosine-protein kinase SYK2.7.10.20.441
4ii5ADPCyclin-dependent kinase 22.7.11.220.441
4wkqIREEpidermal growth factor receptor2.7.10.10.441
5br4NADLactaldehyde reductase1.1.1.770.441
1c70L75Protease/0.440
1s9jBBMDual specificity mitogen-activated protein kinase kinase 12.7.12.20.440
1zhwHC2Oxysterol-binding protein homolog 4/0.440
2cdz23DSerine/threonine-protein kinase PAK 42.7.11.10.440
2hxl422Serine/threonine-protein kinase Chk12.7.11.10.440
2vn0TDZCytochrome P450 2C8/0.440
2w06FRVCyclin-dependent kinase 22.7.11.220.440
2ym44YMSerine/threonine-protein kinase Chk12.7.11.10.440
3fcoIIGCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.440
3gggNADPrephenate dehydrogenase/0.440
3inxJZCHeat shock protein HSP 90-alpha/0.440
3o0g3O0Cyclin-dependent-like kinase 52.7.11.10.440
3w0aDS5Vitamin D3 receptor/0.440
4bcmT7ZCyclin-dependent kinase 22.7.11.220.440
4cy8FDA2-hydroxybiphenyl-3-monooxygenase/0.440
4e4qRRHPeroxisome proliferator-activated receptor gamma/0.440
4i3zADPCyclin-dependent kinase 22.7.11.220.440
4jia1K3Tyrosine-protein kinase JAK2/0.440
4nb6444Nuclear receptor ROR-gamma/0.440