1.750 Å
X-ray
2007-12-20
| Name: | Death-associated protein kinase 3 |
|---|---|
| ID: | DAPK3_HUMAN |
| AC: | O43293 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 26.360 |
|---|---|
| Number of residues: | 30 |
| Including | |
| Standard Amino Acids: | 29 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.238 | 850.500 |
| % Hydrophobic | % Polar |
|---|---|
| 51.59 | 48.41 |
| According to VolSite | |

| HET Code: | 4RB |
|---|---|
| Formula: | C17H18N4O3 |
| Molecular weight: | 326.350 g/mol |
| DrugBank ID: | DB07125 |
| Buried Surface Area: | 63.8 % |
| Polar Surface area: | 103.83 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 5 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 3 |
| Anionic atoms: | 1 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| 3.82725 | 43.743 | 35.5442 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C1L | CB | LEU- 19 | 4.38 | 0 | Hydrophobic |
| C1L | CB | VAL- 27 | 3.88 | 0 | Hydrophobic |
| C1A | CG2 | VAL- 27 | 3.96 | 0 | Hydrophobic |
| C1H | CG2 | VAL- 27 | 4.13 | 0 | Hydrophobic |
| C1S | CB | ALA- 40 | 4.23 | 0 | Hydrophobic |
| O1D | NZ | LYS- 42 | 2.8 | 156.71 | H-Bond (Protein Donor) |
| O1D | NZ | LYS- 42 | 2.8 | 0 | Ionic (Protein Cationic) |
| C1G | CG1 | ILE- 77 | 4.02 | 0 | Hydrophobic |
| C1E | CD1 | LEU- 93 | 3.85 | 0 | Hydrophobic |
| N1N | N | VAL- 96 | 2.94 | 172.11 | H-Bond (Protein Donor) |
| O1C | OE2 | GLU- 100 | 2.89 | 171.03 | H-Bond (Ligand Donor) |
| C1M | SD | MET- 146 | 4.31 | 0 | Hydrophobic |
| C1S | SD | MET- 146 | 3.93 | 0 | Hydrophobic |
| C1G | CG2 | ILE- 160 | 3.8 | 0 | Hydrophobic |
| C1M | CD1 | ILE- 160 | 4.31 | 0 | Hydrophobic |
| C1E | CB | ILE- 160 | 3.62 | 0 | Hydrophobic |
| C1F | CD1 | ILE- 160 | 4.05 | 0 | Hydrophobic |
| O1B | N | ASP- 161 | 2.92 | 149.28 | H-Bond (Protein Donor) |
| O1B | O | HOH- 637 | 2.69 | 159.51 | H-Bond (Protein Donor) |