2.080 Å
X-ray
2013-04-04
| Name: | Serine/threonine-protein kinase pim-1 |
|---|---|
| ID: | PIM1_HUMAN |
| AC: | P11309 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | 2.7.11.1 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 40.793 |
|---|---|
| Number of residues: | 36 |
| Including | |
| Standard Amino Acids: | 34 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.103 | 705.375 |
| % Hydrophobic | % Polar |
|---|---|
| 53.59 | 46.41 |
| According to VolSite | |

| HET Code: | 1OC |
|---|---|
| Formula: | C26H25F2N8O |
| Molecular weight: | 503.526 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 53.34 % |
| Polar Surface area: | 116.61 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 5 |
| H-Bond Donors: | 4 |
| Rings: | 6 |
| Aromatic rings: | 5 |
| Anionic atoms: | 0 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| -41.6108 | -2.12851 | -1.03914 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C3 | CD2 | LEU- 44 | 4.07 | 0 | Hydrophobic |
| C7 | CD1 | LEU- 44 | 4.02 | 0 | Hydrophobic |
| F38 | CD1 | LEU- 44 | 3.39 | 0 | Hydrophobic |
| C9 | CB | ALA- 65 | 4.09 | 0 | Hydrophobic |
| N22 | NZ | LYS- 67 | 2.89 | 171.99 | H-Bond (Protein Donor) |
| DuAr | NZ | LYS- 67 | 3.75 | 125.1 | Pi/Cation |
| N12 | O | GLU- 121 | 2.67 | 172.67 | H-Bond (Ligand Donor) |
| F38 | CD | ARG- 122 | 4.14 | 0 | Hydrophobic |
| F38 | CG1 | VAL- 126 | 3.61 | 0 | Hydrophobic |
| N34 | OD2 | ASP- 128 | 2.68 | 0 | Ionic (Ligand Cationic) |
| C6 | CD2 | LEU- 174 | 4.07 | 0 | Hydrophobic |
| C9 | CD1 | LEU- 174 | 3.66 | 0 | Hydrophobic |
| C36 | CD1 | ILE- 185 | 4.12 | 0 | Hydrophobic |
| F37 | CG1 | ILE- 185 | 4.45 | 0 | Hydrophobic |
| N34 | O | HOH- 548 | 3.02 | 162.62 | H-Bond (Ligand Donor) |