2.080 Å
X-ray
2013-04-04
Name: | Serine/threonine-protein kinase pim-1 |
---|---|
ID: | PIM1_HUMAN |
AC: | P11309 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.7.11.1 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 40.793 |
---|---|
Number of residues: | 36 |
Including | |
Standard Amino Acids: | 34 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.103 | 705.375 |
% Hydrophobic | % Polar |
---|---|
53.59 | 46.41 |
According to VolSite |
HET Code: | 1OC |
---|---|
Formula: | C26H25F2N8O |
Molecular weight: | 503.526 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 53.34 % |
Polar Surface area: | 116.61 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 4 |
Rings: | 6 |
Aromatic rings: | 5 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-41.6108 | -2.12851 | -1.03914 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C3 | CD2 | LEU- 44 | 4.07 | 0 | Hydrophobic |
C7 | CD1 | LEU- 44 | 4.02 | 0 | Hydrophobic |
F38 | CD1 | LEU- 44 | 3.39 | 0 | Hydrophobic |
C9 | CB | ALA- 65 | 4.09 | 0 | Hydrophobic |
N22 | NZ | LYS- 67 | 2.89 | 171.99 | H-Bond (Protein Donor) |
DuAr | NZ | LYS- 67 | 3.75 | 125.1 | Pi/Cation |
N12 | O | GLU- 121 | 2.67 | 172.67 | H-Bond (Ligand Donor) |
F38 | CD | ARG- 122 | 4.14 | 0 | Hydrophobic |
F38 | CG1 | VAL- 126 | 3.61 | 0 | Hydrophobic |
N34 | OD2 | ASP- 128 | 2.68 | 0 | Ionic (Ligand Cationic) |
C6 | CD2 | LEU- 174 | 4.07 | 0 | Hydrophobic |
C9 | CD1 | LEU- 174 | 3.66 | 0 | Hydrophobic |
C36 | CD1 | ILE- 185 | 4.12 | 0 | Hydrophobic |
F37 | CG1 | ILE- 185 | 4.45 | 0 | Hydrophobic |
N34 | O | HOH- 548 | 3.02 | 162.62 | H-Bond (Ligand Donor) |