2.300 Å
X-ray
1996-07-14
Name: | Cyclin-dependent kinase 2 |
---|---|
ID: | CDK2_HUMAN |
AC: | P24941 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.7.11.22 |
Chain Name: | Percentage of Residues within binding site |
---|---|
C | 100 % |
B-Factor: | 61.505 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 29 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.684 | 762.750 |
% Hydrophobic | % Polar |
---|---|
39.38 | 60.62 |
According to VolSite |
HET Code: | ATP |
---|---|
Formula: | C10H12N5O13P3 |
Molecular weight: | 503.149 g/mol |
DrugBank ID: | DB00171 |
Buried Surface Area: | 45.2 % |
Polar Surface area: | 319.88 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 17 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
-31.6979 | 171.274 | 83.8595 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C4' | CG1 | ILE- 10 | 4.43 | 0 | Hydrophobic |
C1' | CG1 | ILE- 10 | 3.71 | 0 | Hydrophobic |
O2G | OG1 | THR- 14 | 2.61 | 150.36 | H-Bond (Protein Donor) |
C5' | CG2 | VAL- 18 | 3.64 | 0 | Hydrophobic |
C4' | CB | VAL- 18 | 4.19 | 0 | Hydrophobic |
C1' | CG1 | VAL- 18 | 4.32 | 0 | Hydrophobic |
N6 | O | GLU- 81 | 2.7 | 147.83 | H-Bond (Ligand Donor) |
N1 | N | LEU- 83 | 2.79 | 167.09 | H-Bond (Protein Donor) |