2.500 Å
X-ray
2011-08-01
| Name: | Rhodopsin kinase |
|---|---|
| ID: | RK_BOVIN |
| AC: | P28327 |
| Organism: | Bos taurus |
| Reign: | Eukaryota |
| TaxID: | 9913 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 42.794 |
|---|---|
| Number of residues: | 32 |
| Including | |
| Standard Amino Acids: | 31 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | MG |
| Ligandability | Volume (Å3) |
|---|---|
| 1.039 | 891.000 |
| % Hydrophobic | % Polar |
|---|---|
| 40.53 | 59.47 |
| According to VolSite | |

| HET Code: | ATP |
|---|---|
| Formula: | C10H12N5O13P3 |
| Molecular weight: | 503.149 g/mol |
| DrugBank ID: | DB00171 |
| Buried Surface Area: | 44.85 % |
| Polar Surface area: | 319.88 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 17 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| -8.86274 | 31.6586 | 37.7108 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O1B | N | GLY- 197 | 2.84 | 161.89 | H-Bond (Protein Donor) |
| C1' | CG2 | VAL- 201 | 4.24 | 0 | Hydrophobic |
| C5' | CG2 | VAL- 201 | 4.24 | 0 | Hydrophobic |
| O2B | NZ | LYS- 216 | 3.17 | 159.4 | H-Bond (Protein Donor) |
| O1A | NZ | LYS- 216 | 2.86 | 136.83 | H-Bond (Protein Donor) |
| O2B | NZ | LYS- 216 | 3.17 | 0 | Ionic (Protein Cationic) |
| O1A | NZ | LYS- 216 | 2.86 | 0 | Ionic (Protein Cationic) |
| N6 | O | THR- 265 | 2.9 | 159.03 | H-Bond (Ligand Donor) |
| N1 | N | MET- 267 | 3.09 | 159.69 | H-Bond (Protein Donor) |
| O1G | MG | MG- 564 | 2.37 | 0 | Metal Acceptor |
| O2B | MG | MG- 564 | 2.18 | 0 | Metal Acceptor |