sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4jql | VJ6 | Heat shock protein HSP 90-alpha |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 4jql | VJ6 | Heat shock protein HSP 90-alpha | / | 1.000 | |
| 3ekr | PY9 | Heat shock protein HSP 90-alpha | / | 0.664 | |
| 4bqj | XKL | Heat shock protein HSP 90-alpha | / | 0.634 | |
| 2byh | 2D7 | Heat shock protein HSP 90-alpha | / | 0.629 | |
| 4b7p | 9UN | Heat shock protein HSP 90-alpha | / | 0.623 | |
| 1yet | GDM | Heat shock protein HSP 90-alpha | / | 0.621 | |
| 2xx2 | 13C | ATP-dependent molecular chaperone HSP82 | / | 0.608 | |
| 3vha | VHA | Heat shock protein HSP 90-alpha | / | 0.606 | |
| 1osf | KOS | Heat shock protein HSP 90-alpha | / | 0.595 | |
| 3eko | PYU | Heat shock protein HSP 90-alpha | / | 0.591 | |
| 1uy7 | PU4 | Heat shock protein HSP 90-alpha | / | 0.586 | |
| 2byi | 2DD | Heat shock protein HSP 90-alpha | / | 0.583 | |
| 2qg0 | A94 | Heat shock protein HSP 90-alpha | / | 0.575 | |
| 1amw | ADP | ATP-dependent molecular chaperone HSP82 | / | 0.572 | |
| 2wi5 | ZZ5 | Heat shock protein HSP 90-alpha | / | 0.566 | |
| 1byq | ADP | Heat shock protein HSP 90-alpha | / | 0.562 | |
| 3ft8 | MOJ | Heat shock protein HSP 90-alpha | / | 0.558 | |
| 4xdm | GDM | Heat shock cognate 90 kDa protein | / | 0.557 | |
| 3r4o | FU3 | Heat shock protein HSP 90-alpha | / | 0.555 | |
| 2yeg | XQG | Heat shock protein HSP 90-alpha | / | 0.554 | |
| 2yef | ANP | Heat shock protein HSP 90-alpha | / | 0.552 | |
| 2xhr | C0P | Heat shock protein HSP 90-alpha | / | 0.549 | |
| 3hhu | 819 | Heat shock protein HSP 90-alpha | / | 0.549 | |
| 3qdd | 94M | Heat shock protein HSP 90-alpha | / | 0.549 | |
| 4ipe | ANP | TNF receptor-associated protein 1 | / | 0.549 | |
| 1uye | PU9 | Heat shock protein HSP 90-alpha | / | 0.548 | |
| 2xab | VHD | Heat shock protein HSP 90-alpha | / | 0.548 | |
| 2xk2 | ADP | Heat shock protein HSP 90-alpha | / | 0.548 | |
| 4gqt | ADP | Heat shock protein 90 | / | 0.545 | |
| 2qg2 | A91 | Heat shock protein HSP 90-alpha | / | 0.543 | |
| 1uyi | PUZ | Heat shock protein HSP 90-alpha | / | 0.541 | |
| 4eft | EFT | Heat shock protein HSP 90-alpha | / | 0.541 | |
| 1yc3 | 4BC | Heat shock protein HSP 90-alpha | / | 0.540 | |
| 2wer | RDC | ATP-dependent molecular chaperone HSP82 | / | 0.540 | |
| 3hyz | 42C | Heat shock protein HSP 90-alpha | / | 0.540 | |
| 3k97 | 4CD | Heat shock protein HSP 90-alpha | / | 0.540 | |
| 4xcj | ADP | Heat shock cognate 90 kDa protein | / | 0.540 | |
| 1am1 | ADP | ATP-dependent molecular chaperone HSP82 | / | 0.539 | |
| 3rlq | 3RQ | Heat shock protein HSP 90-alpha | / | 0.539 | |
| 3t2s | AGS | Heat shock protein HSP 90-alpha | / | 0.539 | |
| 4fcr | 0TM | Heat shock protein HSP 90-alpha | / | 0.538 | |
| 1yc1 | 4BC | Heat shock protein HSP 90-alpha | / | 0.537 | |
| 3t10 | ACP | Heat shock protein HSP 90-alpha | / | 0.537 | |
| 2vcj | 2EQ | Heat shock protein HSP 90-alpha | / | 0.535 | |
| 3ied | AN2 | HSP90 | / | 0.535 | |
| 3k99 | PFT | Heat shock protein HSP 90-alpha | / | 0.535 | |
| 3q5l | KX2 | Heat shock protein 83-1 | / | 0.535 | |
| 4ivg | ANP | TNF receptor-associated protein 1 | / | 0.535 | |
| 2fwy | H64 | Heat shock protein HSP 90-alpha | / | 0.534 | |
| 3d0b | SNX | Heat shock protein HSP 90-alpha | / | 0.534 | |
| 4efu | EFU | Heat shock protein HSP 90-alpha | / | 0.533 | |
| 4xcl | AGS | Heat shock cognate 90 kDa protein | / | 0.532 | |
| 2fxs | RDA | ATP-dependent molecular chaperone HSP82 | / | 0.530 | |
| 2exl | GDM | Endoplasmin | / | 0.529 | |
| 2vw5 | BC6 | ATP-dependent molecular chaperone HSP82 | / | 0.528 | |
| 1uy9 | PU6 | Heat shock protein HSP 90-alpha | / | 0.527 | |
| 4asg | 814 | ATP-dependent molecular chaperone HSP82 | / | 0.527 | |
| 1uy8 | PU5 | Heat shock protein HSP 90-alpha | / | 0.526 | |
| 2xjj | L81 | Heat shock protein HSP 90-alpha | / | 0.525 | |
| 3rlp | 3RP | Heat shock protein HSP 90-alpha | / | 0.524 | |
| 2wi6 | ZZ6 | Heat shock protein HSP 90-alpha | / | 0.523 | |
| 2xht | C0Y | Heat shock protein HSP 90-alpha | / | 0.523 | |
| 1uy6 | PU3 | Heat shock protein HSP 90-alpha | / | 0.522 | |
| 1uyf | PU1 | Heat shock protein HSP 90-alpha | / | 0.522 | |
| 2xcm | ADP | Cytosolic heat shock protein 90 | / | 0.522 | |
| 3r4p | FU7 | Heat shock protein HSP 90-alpha | / | 0.522 | |
| 4as9 | 4QS | ATP-dependent molecular chaperone HSP82 | / | 0.522 | |
| 4asf | 62U | ATP-dependent molecular chaperone HSP82 | / | 0.522 | |
| 2iwu | NP5 | ATP-dependent molecular chaperone HSP82 | / | 0.520 | |
| 2vci | 2GJ | Heat shock protein HSP 90-alpha | / | 0.519 | |
| 3inx | JZC | Heat shock protein HSP 90-alpha | / | 0.519 | |
| 3t1k | ANP | Heat shock protein HSP 90-alpha | / | 0.519 | |
| 1uym | PU3 | Heat shock protein HSP 90-beta | / | 0.517 | |
| 2wi1 | ZZ2 | Heat shock protein HSP 90-alpha | / | 0.517 | |
| 3c11 | GDM | ATP-dependent molecular chaperone HSP82 | / | 0.516 | |
| 4egi | B2J | Heat shock protein HSP 90-alpha | / | 0.516 | |
| 3rlr | 3RR | Heat shock protein HSP 90-alpha | / | 0.515 | |
| 1bgq | RDC | ATP-dependent molecular chaperone HSP82 | / | 0.514 | |
| 2vwc | BC2 | ATP-dependent molecular chaperone HSP82 | / | 0.514 | |
| 2xd6 | XD6 | ATP-dependent molecular chaperone HSP82 | / | 0.513 | |
| 2ykj | YKJ | Heat shock protein HSP 90-alpha | / | 0.513 | |
| 1u0z | RDC | Endoplasmin | / | 0.512 | |
| 2bt0 | CT5 | Heat shock protein HSP 90-alpha | / | 0.510 | |
| 4egk | RDC | Heat shock protein HSP 90-alpha | / | 0.510 | |
| 4nh8 | 2LC | Heat shock protein HSP 90-alpha | / | 0.510 | |
| 4egh | 0OY | Heat shock protein HSP 90-alpha | / | 0.509 | |
| 2bsm | BSM | Heat shock protein HSP 90-alpha | / | 0.508 | |
| 4ce1 | 7FK | ATP-dependent molecular chaperone HSP82 | / | 0.508 | |
| 2ior | ADP | Chaperone protein HtpG | / | 0.507 | |
| 3hz5 | Z64 | Heat shock protein HSP 90-alpha | / | 0.507 | |
| 1uyd | PU8 | Heat shock protein HSP 90-alpha | / | 0.506 | |
| 1yc4 | 43P | Heat shock protein HSP 90-alpha | / | 0.505 | |
| 2gqp | PA7 | Endoplasmin | / | 0.505 | |
| 3hz1 | 42C | Heat shock protein HSP 90-alpha | / | 0.505 | |
| 2iws | NP4 | ATP-dependent molecular chaperone HSP82 | / | 0.504 | |
| 2yee | 2EC | Heat shock protein HSP 90-alpha | / | 0.504 | |
| 2bu8 | ADP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial | 2.7.11.2 | 0.503 | |
| 3t0z | ATP | Heat shock protein HSP 90-alpha | / | 0.503 | |
| 2wi7 | 2KL | Heat shock protein HSP 90-alpha | / | 0.502 | |
| 2gfd | RDA | Endoplasmin | / | 0.501 | |
| 2wi4 | ZZ4 | Heat shock protein HSP 90-alpha | / | 0.501 | |
| 4awp | 99A | Heat shock protein HSP 90-alpha | / | 0.501 | |
| 4xc0 | ACP | Heat shock cognate 90 kDa protein | / | 0.501 | |
| 2qfo | A13 | Heat shock protein HSP 90-alpha | / | 0.500 | |
| 3o0i | P54 | Heat shock protein HSP 90-alpha | / | 0.500 | |
| 4ce2 | BO5 | ATP-dependent molecular chaperone HSP82 | / | 0.500 | |
| 1ysz | NEC | Endoplasmin | / | 0.499 | |
| 1uyk | PUX | Heat shock protein HSP 90-alpha | / | 0.498 | |
| 2wep | ADP | ATP-dependent molecular chaperone HSP82 | / | 0.498 | |
| 2yi6 | 6QM | Heat shock protein HSP 90-alpha | / | 0.498 | |
| 2zdy | ADP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial | 2.7.11.2 | 0.498 | |
| 2h55 | DZ8 | Heat shock protein HSP 90-alpha | / | 0.497 | |
| 2bz5 | AB4 | Heat shock protein HSP 90-alpha | / | 0.496 | |
| 2fwz | H71 | Heat shock protein HSP 90-alpha | / | 0.496 | |
| 2xjx | XJX | Heat shock protein HSP 90-alpha | / | 0.496 | |
| 3omu | IBD | Heat shock protein 83 | / | 0.496 | |
| 4bqg | 50Q | Heat shock protein HSP 90-alpha | / | 0.496 | |
| 5f5r | ANP | Heat shock protein 75 kDa, mitochondrial | / | 0.495 | |
| 2yej | ZZ3 | Heat shock protein HSP 90-alpha | / | 0.494 | |
| 3d2r | ADP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial | 2.7.11.2 | 0.494 | |
| 3inw | JZB | Heat shock protein HSP 90-alpha | / | 0.493 | |
| 3k98 | 1RC | Heat shock protein HSP 90-alpha | / | 0.492 | |
| 1uyh | PU0 | Heat shock protein HSP 90-alpha | / | 0.491 | |
| 3b28 | B2X | Heat shock protein HSP 90-alpha | / | 0.490 | |
| 2yei | XQI | Heat shock protein HSP 90-alpha | / | 0.489 | |
| 1y4s | ADP | Chaperone protein HtpG | / | 0.487 | |
| 2esa | GDM | Endoplasmin | / | 0.487 | |
| 3opd | HIE | Heat shock protein 83 | / | 0.487 | |
| 1i59 | ANP | Chemotaxis protein CheA | 2.7.13.3 | 0.486 | |
| 3r4n | FU5 | Heat shock protein HSP 90-alpha | / | 0.485 | |
| 3wha | WHA | Heat shock protein HSP 90-alpha | / | 0.485 | |
| 3peh | IBD | Endoplasmin homolog, putative | / | 0.481 | |
| 4awo | 99B | Heat shock protein HSP 90-alpha | / | 0.480 | |
| 2fyp | RDE | Endoplasmin | / | 0.479 | |
| 1qy5 | NEC | Endoplasmin | / | 0.478 | |
| 2bre | KJ2 | ATP-dependent molecular chaperone HSP82 | / | 0.478 | |
| 3crl | ANP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial | 2.7.11.2 | 0.478 | |
| 2hch | N5A | Endoplasmin | / | 0.477 | |
| 3o6o | 94M | Heat shock protein 83 | / | 0.477 | |
| 1kbq | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.476 | |
| 2ykc | YKC | Heat shock protein HSP 90-alpha | / | 0.476 | |
| 4ce3 | L4V | ATP-dependent molecular chaperone HSP82 | / | 0.476 | |
| 1qy8 | RDI | Endoplasmin | / | 0.475 | |
| 2brc | CT5 | ATP-dependent molecular chaperone HSP82 | / | 0.475 | |
| 2yjw | YJW | Heat shock protein HSP 90-alpha | / | 0.475 | |
| 1u2o | NEC | Endoplasmin | / | 0.472 | |
| 1uyc | PU7 | Heat shock protein HSP 90-alpha | / | 0.472 | |
| 3pej | BC2 | Endoplasmin homolog, putative | / | 0.471 | |
| 2yk2 | YJW | Heat shock protein HSP 90-alpha | / | 0.467 | |
| 2o1u | ANP | Endoplasmin | / | 0.466 | |
| 2ccu | 2D9 | Heat shock protein HSP 90-alpha | / | 0.465 | |
| 2uwd | 2GG | Heat shock protein HSP 90-alpha | / | 0.464 | |
| 4fcq | 2N6 | Heat shock protein HSP 90-alpha | / | 0.464 | |
| 1i5b | ANP | Chemotaxis protein CheA | 2.7.13.3 | 0.463 | |
| 3hek | BD0 | Heat shock protein HSP 90-alpha | / | 0.463 | |
| 2zkj | ADP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial | 2.7.11.2 | 0.462 | |
| 1yt0 | ADP | Endoplasmin | / | 0.461 | |
| 1i5a | ACP | Chemotaxis protein CheA | 2.7.13.3 | 0.459 | |
| 3h4l | ANP | DNA mismatch repair protein PMS1 | / | 0.459 | |
| 2yi5 | YI5 | Heat shock protein HSP 90-alpha | / | 0.458 | |
| 2iwx | M1S | ATP-dependent molecular chaperone HSP82 | / | 0.457 | |
| 1d4a | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.456 | |
| 1gjv | AGS | [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial | 2.7.11.4 | 0.456 | |
| 1i58 | ADP | Chemotaxis protein CheA | 2.7.13.3 | 0.456 | |
| 2q8i | RDC | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 3, mitochondrial | 2.7.11.2 | 0.456 | |
| 2o1v | ADP | Endoplasmin | / | 0.455 | |
| 1i5c | ADP | Chemotaxis protein CheA | 2.7.13.3 | 0.452 | |
| 2bu9 | HFV | Isopenicillin N synthase | 1.21.3.1 | 0.452 | |
| 2zdx | P4A | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial | 2.7.11.2 | 0.452 | |
| 3ft5 | MO8 | Heat shock protein HSP 90-alpha | / | 0.452 | |
| 2xx4 | 13I | ATP-dependent molecular chaperone HSP82 | / | 0.451 | |
| 2ye9 | 2D4 | Heat shock protein HSP 90-alpha | / | 0.451 | |
| 2e0a | ANP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial | 2.7.11.2 | 0.450 | |
| 5a9s | NAP | Putative dehydrogenase | / | 0.450 | |
| 3k9v | CPS | 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial | / | 0.449 | |
| 3u9e | COA | Lmo1369 protein | / | 0.449 | |
| 2hg1 | N5O | Endoplasmin | / | 0.447 | |
| 2i4p | DRH | Peroxisome proliferator-activated receptor gamma | / | 0.447 | |
| 2vbd | V10 | Isopenicillin N synthase | 1.21.3.1 | 0.447 | |
| 4awq | 592 | Heat shock protein HSP 90-alpha | / | 0.447 | |
| 4c3f | 7KW | Tyrosine-protein kinase Lck | 2.7.10.2 | 0.447 | |
| 4uym | VOR | 14-alpha sterol demethylase Cyp51B | / | 0.447 | |
| 2bu2 | ATP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial | 2.7.11.2 | 0.446 | |
| 3mnr | SD1 | Heat shock protein HSP 90-alpha | / | 0.446 | |
| 3q5k | D1U | Heat shock protein 83-1 | / | 0.446 | |
| 3zc3 | NAP | Ferredoxin--NADP reductase | 1.18.1.2 | 0.446 | |
| 5jla | NAD | Putative short-chain dehydrogenase/reductase | / | 0.446 | |
| 1h66 | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.445 | |
| 1u3d | FAD | Cryptochrome-1 | / | 0.445 | |
| 2ye4 | 2FY | Heat shock protein HSP 90-alpha | / | 0.445 | |
| 4fw8 | NAI | 3-oxoacyl-(Acyl-carrier-protein) reductase | / | 0.445 | |
| 4anx | 534 | Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform | 2.7.1.153 | 0.443 | |
| 4u9a | STU | Interleukin-1 receptor-associated kinase 4 | 2.7.11.1 | 0.443 | |
| 5cpb | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.443 | |
| 2qfo | A51 | Heat shock protein HSP 90-alpha | / | 0.442 | |
| 4qxq | 1YE | Stimulator of interferon genes protein | / | 0.442 | |
| 1z59 | ADP | Type 2 DNA topoisomerase 6 subunit B | / | 0.441 | |
| 4ewn | 0VR | Imidazole glycerol phosphate synthase subunit HisF | 4.1.3 | 0.441 | |
| 4xiv | ADP | Chemotaxis protein CheA | 2.7.13.3 | 0.441 | |
| 1kbo | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.440 | |
| 2hkj | RDC | Type 2 DNA topoisomerase 6 subunit B | / | 0.440 |