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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1zemNADXylitol dehydrogenase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
1zemNADXylitol dehydrogenase/1.000
4fw8NAI3-oxoacyl-(Acyl-carrier-protein) reductase/0.560
1e6wNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.559
5jlaNADPutative short-chain dehydrogenase/reductase/0.555
5jsfNAD17-beta-hydroxysteroid dehydrogenase 141.1.10.552
4gh5NADShort-chain dehydrogenase/reductase SDR/0.551
1gegNADDiacetyl reductase [(S)-acetoin forming]1.1.1.3040.546
3ak4NADNADH-dependent quinuclidinone reductase/0.545
5lc1NADL-threonine 3-dehydrogenase/0.540
2ewmNAD(S)-1-Phenylethanol dehydrogenase1.1.1.3110.535
3a28NADL-2,3-butanediol dehydrogenase1.1.1.760.535
5js6NAD17-beta-hydroxysteroid dehydrogenase 141.1.10.534
3nugNADPyridoxal 4-dehydrogenase1.1.1.1070.533
3wdsNADNADH-dependent quinuclidinone reductase/0.533
2d1yNADOxidoreductase, short-chain dehydrogenase/reductase family/0.529
1e3sNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.525
2hsdNAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase1.1.1.530.523
2dteNAIGlucose 1-dehydrogenase related protein/0.520
4nbtNAD3-oxoacyl-[acyl-carrier-protein] reductase/0.520
3a1nNADNDP-sugar epimerase/0.518
1e3wNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.516
3a4vNADNDP-sugar epimerase/0.515
4yr9NADL-threonine 3-dehydrogenase, mitochondrial1.1.1.1030.515
3rj5NADAlcohol dehydrogenase1.1.1.10.514
3w8dNAD3-hydroxybutyrate dehydrogenase/0.513
4cr8NADN-acylmannosamine 1-dehydrogenase1.1.1.2330.513
4nbwNADShort-chain dehydrogenase/reductase SDR/0.513
2p5uNADUDP-glucose 4-epimerase/0.511
3uxyNADShort-chain dehydrogenase/reductase SDR/0.511
1iy8NADLevodione reductase/0.510
2wsbNADGalactitol dehydrogenase/0.510
2dknNAI3-alpha-hydroxysteroid dehydrogenase/0.509
4nbuNAI3-oxoacyl-(Acyl-carrier-protein) reductase/0.509
3ndrNADPyridoxal 4-dehydrogenase1.1.1.1070.507
4yaiNAIC alpha-dehydrogenase/0.507
3w8fNAD3-hydroxybutyrate dehydrogenase/0.506
1b16NAQAlcohol dehydrogenase1.1.1.10.505
2aa3AP0L-lactate dehydrogenase/0.504
3w8eNAD3-hydroxybutyrate dehydrogenase/0.504
4j7xNAPSepiapterin reductase1.1.1.1530.504
4nd2A3DLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase/0.503
1pr9NAPL-xylulose reductase1.1.1.100.502
1x7hNDPPutative ketoacyl reductase1.3.10.501
4cqlNADEstradiol 17-beta-dehydrogenase 81.1.1.620.500
1b15NAEAlcohol dehydrogenase1.1.1.10.499
1t2dNADL-lactate dehydrogenase1.1.1.270.499
4wlvNADMalate dehydrogenase, mitochondrial1.1.1.370.499
5jy1NADPutative short-chain dehydrogenase/reductase/0.499
4wloNAIMalate dehydrogenase, mitochondrial1.1.1.370.498
1sbyNADAlcohol dehydrogenase1.1.1.10.497
2ag5NAD3-hydroxybutyrate dehydrogenase type 2/0.497
4idgNADPutative UDP-glucose 4-epimerase/0.497
4fn4NADShort chain dehydrogenase/0.496
4j7uNAPSepiapterin reductase1.1.1.1530.496
2a92NAIL-lactate dehydrogenase/0.495
4yagNAIC alpha-dehydrogenase/0.495
2ztmNADD(-)-3-hydroxybutyrate dehydrogenase/0.493
1nfrNAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase1.1.1.530.492
1z7eATPBifunctional polymyxin resistance protein ArnA/0.492
1h5qNAPNADP-dependent mannitol dehydrogenase1.1.1.1380.491
1ie3NADMalate dehydrogenase/0.491
3lqfNADGalactitol dehydrogenase/0.490
3toxNAPPutative oxidoreductase/0.490
1sowNADL-lactate dehydrogenase1.1.1.270.489
3rj9NADAlcohol dehydrogenase1.1.1.10.489
1nqoNADGlyceraldehyde-3-phosphate dehydrogenase/0.488
2ztlNADD(-)-3-hydroxybutyrate dehydrogenase/0.488
3gy0NAPNAD(P)-dependent oxidoreductase/0.488
1g1aNADdTDP-glucose 4,6-dehydratase/0.487
3o4rNAPDehydrogenase/reductase SDR family member 41.1.1.1840.487
4b79NADProbable short-chain dehydrogenase/0.487
1cydNDPCarbonyl reductase [NADPH] 21.1.1.1840.486
3wmxNADNAD dependent epimerase/dehydratase/0.486
1g6kNADGlucose 1-dehydrogenase1.1.1.470.485
1pzgA3DLactate dehydrogenase/0.485
2wdzNADGalactitol dehydrogenase/0.485
3cifNADGlyceraldehyde-3-phosphate dehydrogenase/0.485
1mg5NAIAlcohol dehydrogenase1.1.1.10.484
2q2qNADBeta-D-hydroxybutyrate dehydrogenase/0.484
3sx2NADUncharacterized protein/0.484
4qecNAPElxO/0.484
1nffNAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase1.1.1.530.483
3ajrNADNDP-sugar epimerase/0.483
3d3wNAPL-xylulose reductase1.1.1.100.483
4i5eNAPAlclohol dehydrogenase/short-chain dehydrogenase/0.483
4lisNADUDP-glucose 4-epimerase (Eurofung)/0.483
1n5dNDPCarbonyl reductase [NADPH] 1/0.482
3hjaNADGlyceraldehyde-3-phosphate dehydrogenase/0.482
4ajp88NL-lactate dehydrogenase A chain1.1.1.270.482
4bmsNAPAlclohol dehydrogenase/short-chain dehydrogenase/0.482
3sjuNDPKeto reductase/0.481
4wluNADMalate dehydrogenase, mitochondrial1.1.1.370.481
5jydNADShort chain dehydrogenase/0.481
3docNADGlyceraldehyde-3-phosphate dehydrogenase/0.480
4iqgNAPShort-chain dehydrogenase/reductase SDR/0.480
4is3NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 21.17.98.10.480
1wntNAPL-xylulose reductase1.1.1.100.479
1xg5NAPDehydrogenase/reductase SDR family member 11/0.479
3bhiNAPCarbonyl reductase [NADPH] 11.1.1.1840.478
4impNDPPolyketide synthase extender modules 3-4/0.478
3lu1NADUDP-N-acetylglucosamine 4-epimerase/0.477
1gd1NADGlyceraldehyde-3-phosphate dehydrogenase/0.476
2hjrAPRMalate dehydrogenase, adjacent gene encodes predicted lactate dehydrogenase/0.476
1w4zNAPPutative ketoacyl reductase1.3.10.475
1wvgAPRCDP-glucose 4,6-dehydratase4.2.1.450.475
3gegNADShort-chain dehydrogenase/reductase SDR/0.475
4esoNAPPutative oxidoreductase/0.475
1nq5NADGlyceraldehyde-3-phosphate dehydrogenase/0.474
3ru7NADUDP-N-acetylglucosamine 4-epimerase/0.474
5mdhNADMalate dehydrogenase, cytoplasmic1.1.1.370.474
1gcoNADGlucose 1-dehydrogenase1.1.1.470.473
1gypNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.473
1rkxNADCDP-D-glucose-4,6-dehydratase/0.473
3dbvNADGlyceraldehyde-3-phosphate dehydrogenase/0.473
3qrwNDPPutative ketoacyl reductase1.3.10.473
1b14NADAlcohol dehydrogenase1.1.1.10.472
3cpsNADGlyceraldehyde-3-phosphate dehydrogenase/0.472
3f1kNAPUncharacterized oxidoreductase YciK10.472
1ml3NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.471
2c54NADGDP-mannose 3,5-epimerase5.1.3.180.471
2gdzNAD15-hydroxyprostaglandin dehydrogenase [NAD(+)]1.1.1.1410.471
3r3sNADPutative oxidoreductase/0.471
3rucNADUDP-N-acetylglucosamine 4-epimerase/0.471
1g0nNDPTetrahydroxynaphthalene reductase1.1.1.2520.470
4b8wNAPGDP-L-fucose synthase1.1.1.2710.470
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.470
4o0lNDPNADPH-dependent 3-quinuclidinone reductase/0.470
1rwbNADGlucose 1-dehydrogenase1.1.1.470.469
2ztvNADD(-)-3-hydroxybutyrate dehydrogenase/0.469
3ijrNADOxidoreductase, short chain dehydrogenase/reductase family/0.469
1ae1NAPTropinone reductase 1/0.468
1i3lNADUDP-glucose 4-epimerase/0.468
1naiNADUDP-glucose 4-epimerase5.1.3.20.468
1qxsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.468
2q2vNADBeta-D-hydroxybutyrate dehydrogenase/0.468
2yy7NADL-threonine dehydrogenase/0.468
3cmcNADGlyceraldehyde-3-phosphate dehydrogenase/0.468
3iahNAPPutative oxoacyl-(Acyl carrier protein) reductase/0.468
3pgxNADUncharacterized NAD-dependent oxidoreductase MAP_4146/0.468
4p8rNADGlyceraldehyde-3-phosphate dehydrogenase/0.468
1xseNDPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.467
2yutNAPPutative short-chain oxidoreductase/0.467
4l4sNAIL-lactate dehydrogenase A chain1.1.1.270.467
3rudNADUDP-N-acetylglucosamine 4-epimerase/0.466
3sxpNADADP-L-glycero-D-mannoheptose-6-epimerase/0.466
4gllNADUDP-glucuronic acid decarboxylase 14.1.1.350.466
2ydxNAPMethionine adenosyltransferase 2 subunit beta/0.465
3vdqNAD3-hydroxybutyrate dehydrogenase/0.465
3s55NADPutative short-chain dehydrogenase/reductase/0.464
4fj0NAP17beta-hydroxysteroid dehydrogenase/0.464
4hwkNAPSepiapterin reductase1.1.1.1530.463
1ipeNDPTropinone reductase 21.1.1.2360.462
4dmmNAP3-oxoacyl-[acyl-carrier-protein] reductase/0.462
4nd4NADLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase/0.462
1geeNADGlucose 1-dehydrogenase1.1.1.470.461
1kvrNADUDP-glucose 4-epimerase5.1.3.20.461
1x7gNAPPutative ketoacyl reductase1.3.10.461
2hunNAD336aa long hypothetical dTDP-glucose 4,6-dehydratase/0.461
3qwfNAP17beta-hydroxysteroid dehydrogenase/0.461
4rf2NAPNADPH dependent R-specific alcohol dehydrogenase/0.461
2c59NADGDP-mannose 3,5-epimerase5.1.3.180.460
3aw9NADNAD-dependent epimerase/dehydratase/0.460
3p19NDPPutative blue fluorescent protein/0.460
2g5cNADPrephenate dehydrogenase/0.459
3g49NAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.459
4dc1NDPPutative ketoacyl reductase1.3.10.459
4qedNAPElxO/0.459
5ig2NADShort-chain dehydrogenase/reductase SDR/0.459
4ng5NAJAlcohol dehydrogenase E chain1.1.1.10.458
4xq9NADHomospermidine synthase2.5.1.440.458
1a7kNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.457
1bxkNADdTDP-glucose 4,6-dehydratase 2/0.457
3ojlNADCap5O/0.457
3rufNADUDP-N-acetylglucosamine 4-epimerase/0.457
1mgoNADAlcohol dehydrogenase E chain1.1.1.10.456
1pzfA3DLactate dehydrogenase/0.456
3ggoNAIPrephenate dehydrogenase/0.456
4bmvNAPShort-chain dehydrogenase/0.456
4ej0NAPADP-L-glycero-D-manno-heptose-6-epimerase/0.456
1nytNAPShikimate dehydrogenase (NADP(+))/0.455
1xkqNDPUncharacterized protein/0.455
1nptNADGlyceraldehyde-3-phosphate dehydrogenase/0.454
3ai2NDPNADPH-sorbose reductase/0.454
4k9dNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.454
4xqcNADHomospermidine synthase2.5.1.440.454
3rkuNAPNADP-dependent 3-hydroxy acid dehydrogenase/0.453
3lvfNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.452
4dwvNAJAlcohol dehydrogenase E chain1.1.1.10.452
1cerNADGlyceraldehyde-3-phosphate dehydrogenase/0.451
1oaaNAPSepiapterin reductase1.1.1.1530.451
1znqNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.451
3ggpNADPrephenate dehydrogenase/0.451
3ksdNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.451
3l77NJPShort-chain alcohol dehydrogenase/0.451
3ruhNADUDP-N-acetylglucosamine 4-epimerase/0.451
4fj2NAP17beta-hydroxysteroid dehydrogenase/0.451
1ybaNADD-3-phosphoglycerate dehydrogenase1.1.1.950.450
4plpNADHomospermidine synthase2.5.1.440.450
1vl8NAPOxidoreductase, short chain dehydrogenase/reductase family/0.449
2ohxNADAlcohol dehydrogenase E chain1.1.1.10.449
3a9wNADNDP-sugar epimerase/0.449
4bv9NDPKetimine reductase mu-crystallin1.5.1.250.449
4j4bNAIUncharacterized protein/0.449
2vynNADGlyceraldehyde-3-phosphate dehydrogenase A/0.448
4xrgNADHomospermidine synthase2.5.1.440.448
1snyNAPLD36273p/0.447
2ebaFADPutative glutaryl-CoA dehydrogenase/0.447
3ai3NDPNADPH-sorbose reductase/0.447
3l4sNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.447
4b8zNAPGDP-L-fucose synthase1.1.1.2710.447
4z3dNDPCarbonyl reductase [NADPH] 11.1.1.1840.447
2zatNAPDehydrogenase/reductase SDR family member 41.1.1.1840.446
1nqaNADGlyceraldehyde-3-phosphate dehydrogenase/0.445
2bd0NAPSepiapterin reductase/0.445
4jjiNADAlcohol dehydrogenase class-3/0.445
1i2bNADUDP-sulfoquinovose synthase, chloroplastic3.13.1.10.444
2ekpNAD2-deoxy-D-gluconate 3-dehydrogenase/0.444
2g82NADGlyceraldehyde-3-phosphate dehydrogenase/0.444
2x86NAPADP-L-glycero-D-manno-heptose-6-epimerase/0.444
3zdfNADGlyceraldehyde-3-phosphate dehydrogenase/0.444
4ajo88NL-lactate dehydrogenase A chain1.1.1.270.444
4o59NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.443
4tvbNADHomospermidine synthase2.5.1.440.443
1edoNAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic1.1.1.1000.442
2fn7NADLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase/0.442
2fzeAPRAlcohol dehydrogenase class-31.1.1.10.442
2jahNDPClavaldehyde dehydrogenase/0.442
4fj1NAP17beta-hydroxysteroid dehydrogenase/0.442
4gl4NAIAlcohol dehydrogenase class-3/0.442
3e5rNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.441
3ruaNADUDP-N-acetylglucosamine 4-epimerase/0.441
2pa3NAID-3-phosphoglycerate dehydrogenase1.1.1.950.440
4e5yNDPGDP-L-fucose synthase1.1.1.2710.440