2.750 Å
X-ray
2003-09-08
| Name: | Glyceraldehyde-3-phosphate dehydrogenase, glycosomal |
|---|---|
| ID: | G3PG_TRYCR |
| AC: | P22513 |
| Organism: | Trypanosoma cruzi |
| Reign: | Eukaryota |
| TaxID: | 5693 |
| EC Number: | 1.2.1.12 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 9 % |
| C | 91 % |
| B-Factor: | 65.597 |
|---|---|
| Number of residues: | 43 |
| Including | |
| Standard Amino Acids: | 43 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.425 | 1194.750 |
| % Hydrophobic | % Polar |
|---|---|
| 42.94 | 57.06 |
| According to VolSite | |

| HET Code: | NAD |
|---|---|
| Formula: | C21H26N7O14P2 |
| Molecular weight: | 662.417 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 57.11 % |
| Polar Surface area: | 343.54 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 18 |
| H-Bond Donors: | 6 |
| Rings: | 5 |
| Aromatic rings: | 3 |
| Anionic atoms: | 2 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 3 |
| Rotatable Bonds: | 11 |
| X | Y | Z |
|---|---|---|
| 2.90366 | 2.889 | 47.3686 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2A | N | ARG- 12 | 3.46 | 147.8 | H-Bond (Protein Donor) |
| O1N | N | ILE- 13 | 2.68 | 160.81 | H-Bond (Protein Donor) |
| C3N | CG1 | ILE- 13 | 3.58 | 0 | Hydrophobic |
| C4N | CD1 | ILE- 13 | 3.84 | 0 | Hydrophobic |
| C5N | CG1 | ILE- 13 | 4.39 | 0 | Hydrophobic |
| O2B | OD1 | ASP- 38 | 2.7 | 148.55 | H-Bond (Ligand Donor) |
| O2B | OD2 | ASP- 38 | 3.42 | 150.85 | H-Bond (Ligand Donor) |
| N6A | O | GLN- 91 | 3.11 | 159 | H-Bond (Ligand Donor) |
| C2D | CB | ALA- 135 | 4.38 | 0 | Hydrophobic |
| C3N | SG | CYS- 166 | 4.37 | 0 | Hydrophobic |
| C4N | CB | CYS- 166 | 3.49 | 0 | Hydrophobic |
| O7N | ND2 | ASN- 335 | 3.42 | 164.99 | H-Bond (Protein Donor) |
| C5N | CB | TYR- 339 | 4.42 | 0 | Hydrophobic |
| C5N | CD1 | TYR- 339 | 3.47 | 0 | Hydrophobic |